Format

Send to:

Choose Destination
    • Showing Current items.

    Ly96 lymphocyte antigen 96 [ Cricetulus griseus (Chinese hamster) ]

    Gene ID: 100689342, updated on 20-Dec-2018

    Summary

    Gene symbol
    Ly96
    Gene description
    lymphocyte antigen 96
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Cricetulus griseus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
    Also known as
    Md2; Ly-96
    Orthologs

    Genomic context

    See Ly96 in Genome Data Viewer
    Location:
    chromosome: 2, chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613806.1 (235437..256523)

    NW_003613806.1Genomic Context describing neighboring genes Neighboring gene elongin C Neighboring gene transmembrane protein 70 Neighboring gene acetyl-CoA carboxylase alpha Neighboring gene apoptosis antagonizing transcription factor

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    • NF-kappa B signaling pathway, organism-specific biosystem (from KEGG)
      NF-kappa B signaling pathway, organism-specific biosystemNuclear factor-kappa B (NF-kappa B) is the generic name of a family of transcription factors that function as dimers and regulate genes involved in immunity, inflammation and cell survival. There are...
    • NF-kappa B signaling pathway, conserved biosystem (from KEGG)
      NF-kappa B signaling pathway, conserved biosystemNuclear factor-kappa B (NF-kappa B) is the generic name of a family of transcription factors that function as dimers and regulate genes involved in immunity, inflammation and cell survival. There are...
    • Pertussis, organism-specific biosystem (from KEGG)
      Pertussis, organism-specific biosystemPertussis, also known as whooping cough, is an acute respiratory infectious disease caused by a bacteria called Bordetella Pertussis. The characteristic symptoms are paroxysmal cough, inspiratory whe...
    • Pertussis, conserved biosystem (from KEGG)
      Pertussis, conserved biosystemPertussis, also known as whooping cough, is an acute respiratory infectious disease caused by a bacteria called Bordetella Pertussis. The characteristic symptoms are paroxysmal cough, inspiratory whe...
    • Toll-like receptor signaling pathway, organism-specific biosystem (from KEGG)
      Toll-like receptor signaling pathway, organism-specific biosystemSpecific families of pattern recognition receptors are responsible for detecting microbial pathogens and generating innate immune responses. Toll-like receptors (TLRs) are membrane-bound receptors id...
    • Toll-like receptor signaling pathway, conserved biosystem (from KEGG)
      Toll-like receptor signaling pathway, conserved biosystemSpecific families of pattern recognition receptors are responsible for detecting microbial pathogens and generating innate immune responses. Toll-like receptors (TLRs) are membrane-bound receptors id...
    • Toxoplasmosis, organism-specific biosystem (from KEGG)
      Toxoplasmosis, organism-specific biosystemToxoplasma gondii is an obligate intracellular parasite that is prevalent worldwide. The tachyzoite form acquired by oral ingestion downmodulates proinflammatory signaling pathways via various mechan...
    • Toxoplasmosis, conserved biosystem (from KEGG)
      Toxoplasmosis, conserved biosystemToxoplasma gondii is an obligate intracellular parasite that is prevalent worldwide. The tachyzoite form acquired by oral ingestion downmodulates proinflammatory signaling pathways via various mechan...

    General protein information

    Preferred Names
    lymphocyte antigen 96
    Names
    Protein MD-2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001246773.1NP_001233702.1  lymphocyte antigen 96 precursor

      See identical proteins and their annotated locations for NP_001233702.1

      Status: PROVISIONAL

      Source sequence(s)
      AF325501
      UniProtKB/Swiss-Prot
      P58755
      Conserved Domains (1) summary
      cl00274
      Location:22153
      ML; The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of ...

    RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CriGri_1.0 Primary Assembly

    Genomic

    1. NW_003613806.1 Reference CriGri_1.0 Primary Assembly

      Range
      235437..256523
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007641462.3XP_007639652.1  lymphocyte antigen 96 isoform X1

      Conserved Domains (1) summary
      cl00274
      Location:22123
      ML; The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of ...

    Alternate CriGri-PICR

    Genomic

    1. NW_020822450.1 Alternate CriGri-PICR

      Range
      10964986..10986510 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center