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    TCF12 transcription factor 12 [ Canis lupus familiaris (dog) ]

    Gene ID: 100684199, updated on 26-Sep-2018

    Summary

    Official Symbol
    TCF12provided by VGNC
    Official Full Name
    transcription factor 12provided by VGNC
    Primary source
    VGNC:VGNC:47189
    See related
    Ensembl:ENSCAFG00000016200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    TF12
    Orthologs

    Genomic context

    See TCF12 in Genome Data Viewer
    Location:
    chromosome: 30
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    105 current CanFam3.1 (GCF_000002285.3) 30 NC_006612.3 (22108841..22473224)

    Chromosome 30 - NC_006612.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111093350 Neighboring gene zinc finger protein 280D Neighboring gene uncharacterized LOC102154430 Neighboring gene RAN, member RAS oncogene family Neighboring gene sperm-associated antigen 7-like Neighboring gene cingulin like 1 Neighboring gene myocardial zonula adherens protein

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_006612.3 Chromosome 30 Reference CanFam3.1 Primary Assembly

    General gene information

    Markers

    Homology

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CanFam3.1 Primary Assembly

    Genomic

    1. NC_006612.3 Reference CanFam3.1 Primary Assembly

      Range
      22108841..22473224
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005638449.3XP_005638506.1  transcription factor 12 isoform X1

      Conserved Domains (2) summary
      smart00353
      Location:606659
      HLH; helix loop helix domain
      pfam09786
      Location:296441
      CytochromB561_N; Cytochrome B561, N terminal
    2. XM_022412576.1XP_022268284.1  transcription factor 12 isoform X2

      Conserved Domains (2) summary
      smart00353
      Location:605658
      HLH; helix loop helix domain
      pfam10428
      Location:261404
      SOG2; RAM signalling pathway protein
    3. XM_022412577.1XP_022268285.1  transcription factor 12 isoform X4

      Conserved Domains (2) summary
      smart00353
      Location:599652
      HLH; helix loop helix domain
      pfam10428
      Location:261404
      SOG2; RAM signalling pathway protein
    4. XM_003433916.4XP_003433964.1  transcription factor 12 isoform X3

      Related
      ENSCAFP00000023912.3, ENSCAFT00000025746.3
      Conserved Domains (2) summary
      smart00353
      Location:600653
      HLH; helix loop helix domain
      pfam09786
      Location:296441
      CytochromB561_N; Cytochrome B561, N terminal
    5. XM_005638450.3XP_005638507.1  transcription factor 12 isoform X5

      Conserved Domains (1) summary
      smart00353
      Location:582635
      HLH; helix loop helix domain
    6. XM_014109430.2XP_013964905.1  transcription factor 12 isoform X6

      UniProtKB/TrEMBL
      F6Y2I2
      Related
      ENSCAFP00000023922.3, ENSCAFT00000025756.4
      Conserved Domains (1) summary
      smart00353
      Location:576629
      HLH; helix loop helix domain
    7. XM_022412578.1XP_022268286.1  transcription factor 12 isoform X7

      Conserved Domains (1) summary
      smart00353
      Location:575628
      HLH; helix loop helix domain
    8. XM_005638452.3XP_005638509.1  transcription factor 12 isoform X8

      Conserved Domains (2) summary
      smart00353
      Location:555608
      HLH; helix loop helix domain
      pfam10428
      Location:210353
      SOG2; RAM signalling pathway protein
    9. XM_014109431.2XP_013964906.1  transcription factor 12 isoform X9

      Conserved Domains (2) summary
      smart00353
      Location:437490
      HLH; helix loop helix domain
      pfam10428
      Location:98241
      SOG2; RAM signalling pathway protein
    10. XM_022412579.1XP_022268287.1  transcription factor 12 isoform X10

      Conserved Domains (2) summary
      smart00353
      Location:419472
      HLH; helix loop helix domain
      cl25541
      Location:317435
      eIF2A; Eukaryotic translation initiation factor eIF2A
    11. XM_022412580.1XP_022268288.1  transcription factor 12 isoform X12

      Conserved Domains (1) summary
      smart00353
      Location:412465
      HLH; helix loop helix domain
    12. XM_003433913.4XP_003433961.1  transcription factor 12 isoform X11

      Conserved Domains (1) summary
      smart00353
      Location:413466
      HLH; helix loop helix domain
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