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    THBS1 thrombospondin 1 [ Meleagris gallopavo (turkey) ]

    Gene ID: 100542373, updated on 8-Apr-2017

    Summary

    Gene symbol
    THBS1
    Gene description
    thrombospondin 1
    See related
    Ensembl:ENSMGAG00000012054
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Meleagris gallopavo
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris
    Orthologs

    Genomic context

    See THBS1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    102 current Turkey_5.0 (GCF_000146605.2) 5 NC_015015.2 (31753708..31769242, complement)
    Build 1.1 previous assembly Turkey_2.01 (GCF_000146605.1) 5 NC_015015.1 (30704462..30720093, complement)

    Chromosome 5 - NC_015015.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104911170 Neighboring gene fibrous sheath-interacting protein 1-like Neighboring gene uncharacterized LOC109368021 Neighboring gene G protein-coupled receptor 176

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • ECM-receptor interaction, organism-specific biosystem (from KEGG)
      ECM-receptor interaction, organism-specific biosystemThe extracellular matrix (ECM) consists of a complex mixture of structural and functional macromolecules and serves an important role in tissue and organ morphogenesis and in the maintenance of cell ...
    • ECM-receptor interaction, conserved biosystem (from KEGG)
      ECM-receptor interaction, conserved biosystemThe extracellular matrix (ECM) consists of a complex mixture of structural and functional macromolecules and serves an important role in tissue and organ morphogenesis and in the maintenance of cell ...
    • Focal adhesion, organism-specific biosystem (from KEGG)
      Focal adhesion, organism-specific biosystemCell-matrix adhesions play essential roles in important biological processes including cell motility, cell proliferation, cell differentiation, regulation of gene expression and cell survival. At the...
    • Focal adhesion, conserved biosystem (from KEGG)
      Focal adhesion, conserved biosystemCell-matrix adhesions play essential roles in important biological processes including cell motility, cell proliferation, cell differentiation, regulation of gene expression and cell survival. At the...
    • Phagosome, organism-specific biosystem (from KEGG)
      Phagosome, organism-specific biosystemPhagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is...
    • Phagosome, conserved biosystem (from KEGG)
      Phagosome, conserved biosystemPhagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is...
    • TGF-beta signaling pathway, organism-specific biosystem (from KEGG)
      TGF-beta signaling pathway, organism-specific biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...
    • TGF-beta signaling pathway, conserved biosystem (from KEGG)
      TGF-beta signaling pathway, conserved biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...
    • p53 signaling pathway, organism-specific biosystem (from KEGG)
      p53 signaling pathway, organism-specific biosystemp53 activation is induced by a number of stress signals, including DNA damage, oxidative stress and activated oncogenes. The p53 protein is employed as a transcriptional activator of p53-regulated ge...
    • p53 signaling pathway, conserved biosystem (from KEGG)
      p53 signaling pathway, conserved biosystemp53 activation is induced by a number of stress signals, including DNA damage, oxidative stress and activated oncogenes. The p53 protein is employed as a transcriptional activator of p53-regulated ge...

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Meleagris gallopavo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Turkey_5.0 Primary Assembly

    Genomic

    1. NC_015015.2 Reference Turkey_5.0 Primary Assembly

      Range
      31753708..31769242 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010711620.2XP_010709922.1  thrombospondin-1

      Conserved Domains (10) summary
      smart00209
      Location:448500
      TSP1; Thrombospondin type 1 repeats
      sd00001
      Location:855892
      TSP3; TSP3 repeat_long [structural motif]
      sd00002
      Location:797831
      TSP3; TSP3 repeat_long [structural motif]
      sd00003
      Location:701736
      TSP3_1C; TSP3 repeat_1C [structural motif]
      pfam00090
      Location:393438
      TSP_1; Thrombospondin type 1 domain
      pfam00093
      Location:328382
      VWC; von Willebrand factor type C domain
      pfam02412
      Location:856892
      TSP_3; Thrombospondin type 3 repeat
      pfam05735
      Location:9821179
      TSP_C; Thrombospondin C-terminal region
      pfam12947
      Location:660699
      EGF_3; EGF domain
      cl22861
      Location:31231
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
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