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    pcsk1 proprotein convertase subtilisin/kexin type 1 [ Oreochromis niloticus (Nile tilapia) ]

    Gene ID: 100534403, updated on 12-Sep-2018

    Summary

    Gene symbol
    pcsk1
    Gene description
    proprotein convertase subtilisin/kexin type 1
    See related
    Ensembl:ENSONIG00000020378
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oreochromis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
    Expression
    Biased expression in brain (RPKM 38.2), eye (RPKM 7.5) and 1 other tissue See more
    Orthologs

    Genomic context

    See pcsk1 in Genome Data Viewer
    Location:
    chromosome: LG5
    Exon count:
    14
    Annotation release Status Assembly LG Location
    104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG5 NC_031970.2 (28461413..28475250, complement)
    103 previous assembly ASM185804v2 (GCF_001858045.1) LG5 NC_031970.1 (10453990..10467821)

    Linkage Group LG5 - NC_031970.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112846954 Neighboring gene elongation factor for RNA polymerase II 2 Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 Neighboring gene calpastatin Neighboring gene uncharacterized LOC100709685 Neighboring gene uncharacterized LOC100689918

    Genomic regions, transcripts, and products

    Expression

    • Project title: Oreochromis niloticus Transcriptome or Gene expression
    • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
    • BioProject: PRJNA78915
    • Analysis date: Fri Dec 29 00:23:36 2017

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General protein information

    Preferred Names
    neuroendocrine convertase 1
    Names
    prohormone convertase 1
    putative prohormone convertase 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference O_niloticus_UMD_NMBU Primary Assembly

    Genomic

    1. NC_031970.2 Reference O_niloticus_UMD_NMBU Primary Assembly

      Range
      28461413..28475250 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003442699.5XP_003442747.1  neuroendocrine convertase 1

      UniProtKB/TrEMBL
      I3KX34
      Related
      ENSONIP00000025680
      Conserved Domains (5) summary
      cd04059
      Location:126420
      Peptidases_S8_Protein_convertases_Kexins_Furin-like; Peptidase S8 family domain in Protein convertases
      pfam00082
      Location:163437
      Peptidase_S8; Subtilase family
      pfam01483
      Location:509596
      P_proprotein; Proprotein convertase P-domain
      pfam12177
      Location:731766
      Proho_convert; Prohormone convertase enzyme
      pfam16470
      Location:35111
      S8_pro-domain; Peptidase S8 pro-domain
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