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    rad1 RAD1 checkpoint DNA exonuclease [ Ictalurus punctatus (channel catfish) ]

    Gene ID: 100528686, updated on 13-Oct-2018

    Summary

    Gene symbol
    rad1
    Gene description
    RAD1 checkpoint DNA exonuclease
    See related
    Ensembl:ENSIPUG00000006652
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ictalurus punctatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
    Orthologs

    Genomic context

    See rad1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current IpCoco_1.2 (GCF_001660625.1) 17 NC_030432.1 (17105615..17110951)

    Chromosome 17 - NC_030432.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 97 Neighboring gene intraflagellar transport 20 Neighboring gene SUMO1 activating enzyme subunit 1 Neighboring gene zinc finger CCCH-type containing 4

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_030432.1 Chromosome 17 Reference IpCoco_1.2 Primary Assembly

    General protein information

    Preferred Names
    cell cycle checkpoint protein RAD1
    Names
    RAD1 homolog
    NP_001187885.1
    XP_017345611.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001200956.1NP_001187885.1  cell cycle checkpoint protein RAD1

      See identical proteins and their annotated locations for NP_001187885.1

      Status: PROVISIONAL

      Source sequence(s)
      GU589302
      UniProtKB/TrEMBL
      E3TG17
      Related
      ENSIPUP00000009712.1, ENSIPUT00000010139.1
      Conserved Domains (2) summary
      cd00577
      Location:18275
      PCNA; Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea. These polymerase processivity factors play a role in DNA replication and repair. PCNA encircles duplex DNA in its central cavity, providing a DNA-bound platform for the ...
      pfam02144
      Location:15256
      Rad1; Repair protein Rad1/Rec1/Rad17

    RefSeqs of Annotated Genomes: Ictalurus punctatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IpCoco_1.2 Primary Assembly

    Genomic

    1. NC_030432.1 Reference IpCoco_1.2 Primary Assembly

      Range
      17105615..17110951
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017490122.1XP_017345611.1  cell cycle checkpoint protein RAD1 isoform X1

      UniProtKB/TrEMBL
      A0A2D0SSY7
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