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    sdsl serine dehydratase like [ Ictalurus punctatus (channel catfish) ]

    Gene ID: 100528564, updated on 13-Oct-2018

    Summary

    Gene symbol
    sdsl
    Gene description
    serine dehydratase like
    See related
    Ensembl:ENSIPUG00000011383
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ictalurus punctatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
    Orthologs

    Genomic context

    See sdsl in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current IpCoco_1.2 (GCF_001660625.1) 9 NC_030424.1 (3224148..3228962)

    Chromosome 9 - NC_030424.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase TRIM39-like Neighboring gene protein tyrosine phosphatase type IVA 2-like Neighboring gene apoptosis-stimulating of p53 protein 1-like Neighboring gene disheveled-associated activator of morphogenesis 1-like Neighboring gene G protein-coupled receptor 135

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_030424.1 Chromosome 9 Reference IpCoco_1.2 Primary Assembly

    Pathways from BioSystems

    • Biosynthesis of amino acids, organism-specific biosystem (from KEGG)
      Biosynthesis of amino acids, organism-specific biosystemThis map presents a modular architecture of the biosynthesis pathways of twenty amino acids, which may be viewed as consisting of the core part and its extensions. The core part is the KEGG module fo...
    • Biosynthesis of amino acids, conserved biosystem (from KEGG)
      Biosynthesis of amino acids, conserved biosystemThis map presents a modular architecture of the biosynthesis pathways of twenty amino acids, which may be viewed as consisting of the core part and its extensions. The core part is the KEGG module fo...
    • Carbon metabolism, organism-specific biosystem (from KEGG)
      Carbon metabolism, organism-specific biosystemCarbon metabolism is the most basic aspect of life. This map presents an overall view of central carbon metabolism, where the number of carbons is shown for each compound denoted by a circle, excludi...
    • Carbon metabolism, conserved biosystem (from KEGG)
      Carbon metabolism, conserved biosystemCarbon metabolism is the most basic aspect of life. This map presents an overall view of central carbon metabolism, where the number of carbons is shown for each compound denoted by a circle, excludi...
    • Cysteine and methionine metabolism, organism-specific biosystem (from KEGG)
      Cysteine and methionine metabolism, organism-specific biosystemCysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted f...
    • Cysteine and methionine metabolism, conserved biosystem (from KEGG)
      Cysteine and methionine metabolism, conserved biosystemCysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted f...
    • Glycine, serine and threonine metabolism, organism-specific biosystem (from KEGG)
      Glycine, serine and threonine metabolism, organism-specific biosystemSerine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In ...
    • Glycine, serine and threonine metabolism, conserved biosystem (from KEGG)
      Glycine, serine and threonine metabolism, conserved biosystemSerine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In ...
    • Metabolic pathways, organism-specific biosystem (from KEGG)
      Metabolic pathways, organism-specific biosystem
      Metabolic pathways
    • Valine, leucine and isoleucine biosynthesis, organism-specific biosystem (from KEGG)
      Valine, leucine and isoleucine biosynthesis, organism-specific biosystem
      Valine, leucine and isoleucine biosynthesis
    • Valine, leucine and isoleucine biosynthesis, conserved biosystem (from KEGG)
      Valine, leucine and isoleucine biosynthesis, conserved biosystem
      Valine, leucine and isoleucine biosynthesis

    General protein information

    Preferred Names
    serine dehydratase-like
    NP_001187763.1
    XP_017330770.1
    XP_017330771.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001200834.1NP_001187763.1  serine dehydratase-like

      See identical proteins and their annotated locations for NP_001187763.1

      Status: PROVISIONAL

      Source sequence(s)
      GU589138
      UniProtKB/TrEMBL
      E3TFK4
      Related
      ENSIPUP00000016844.1, ENSIPUT00000017557.1
      Conserved Domains (2) summary
      cd06448
      Location:10317
      L-Ser-dehyd; Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
      pfam00291
      Location:4303
      PALP; Pyridoxal-phosphate dependent enzyme

    RefSeqs of Annotated Genomes: Ictalurus punctatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IpCoco_1.2 Primary Assembly

    Genomic

    1. NC_030424.1 Reference IpCoco_1.2 Primary Assembly

      Range
      3224148..3228962
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017475282.1XP_017330771.1  serine dehydratase-like isoform X1

      UniProtKB/TrEMBL
      A0A2D0RKV2
    2. XM_017475281.1XP_017330770.1  serine dehydratase-like isoform X1

      UniProtKB/TrEMBL
      A0A2D0RKV2
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