Format

Send to:

Choose Destination
    • Showing Current items.

    APOB apolipoprotein B [ Sus scrofa (pig) ]

    Gene ID: 100523371, updated on 2-Oct-2018

    Summary

    Gene symbol
    APOB
    Gene description
    apolipoprotein B
    See related
    Ensembl:ENSSSCG00000008595
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Biased expression in liver (RPKM 310.5) and mixtures (RPKM 128.8) See more
    Orthologs

    Genomic context

    See APOB in Genome Data Viewer
    Location:
    3q24-qter
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (117250096..117316200)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003613573.1 (37044..58900)

    Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102159977 Neighboring gene uncharacterized LOC110260049 Neighboring gene tudor domain containing 15 Neighboring gene uncharacterized LOC110260050 Neighboring gene uncharacterized LOC102168156

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    • Fat digestion and absorption, organism-specific biosystem (from KEGG)
      Fat digestion and absorption, organism-specific biosystemFat is an important energy source from food. More than 95% of dietary fat is long-chain triacylglycerols (TAG), the remaining being phospholipids (4.5%) and sterols. In the small intestine lumen, die...
    • Fat digestion and absorption, conserved biosystem (from KEGG)
      Fat digestion and absorption, conserved biosystemFat is an important energy source from food. More than 95% of dietary fat is long-chain triacylglycerols (TAG), the remaining being phospholipids (4.5%) and sterols. In the small intestine lumen, die...
    • Vitamin digestion and absorption, organism-specific biosystem (from KEGG)
      Vitamin digestion and absorption, organism-specific biosystemVitamins are a diverse and chemically unrelated group of organic substances that share a common feature of being essential for normal health and well-being. They catalyze numerous biochemical reactio...
    • Vitamin digestion and absorption, conserved biosystem (from KEGG)
      Vitamin digestion and absorption, conserved biosystemVitamins are a diverse and chemically unrelated group of organic substances that share a common feature of being essential for normal health and well-being. They catalyze numerous biochemical reactio...

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    apolipoprotein B-100
    Names
    apolipoprotein B (including Ag(x) antigen)

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001315684.1NP_001302613.1  apolipoprotein B-100

      Status: PROVISIONAL

      Source sequence(s)
      KP641122
      UniProtKB/TrEMBL
      A0A0F6TNY5
      Related
      ENSSSCP00000038841.1, ENSSSCT00000062425.1
      Conserved Domains (5) summary
      COG1340
      Location:36263868
      COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
      pfam01347
      Location:170546
      Vitellogenin_N; Lipoprotein amino terminal region
      pfam06448
      Location:542598
      DUF1081; Domain of Unknown Function (DUF1081)
      pfam12491
      Location:38113867
      ApoB100_C; Apolipoprotein B100 C terminal
      cl12078
      Location:17031840
      p450; Cytochrome P450

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

      Range
      117250096..117316200
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021085692.1XP_020941351.1  apolipoprotein B-100 isoform X1

      Related
      ENSSSCP00000042786.1, ENSSSCT00000037331.1
      Conserved Domains (5) summary
      pfam06448
      Location:9561058
      DUF1081; Domain of Unknown Function (DUF1081)
      pfam09172
      Location:628934
      DUF1943; Domain of unknown function (DUF1943)
      pfam12491
      Location:45024558
      ApoB100_C; Apolipoprotein B100 C terminal
      cl25732
      Location:20892481
      SMC_N; RecF/RecN/SMC N terminal domain
      cl26969
      Location:42593
      Vitellogenin_N; Lipoprotein amino terminal region
    Support Center