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    APBA1 amyloid beta precursor protein binding family A member 1 [ Sus scrofa (pig) ]

    Gene ID: 100513711, updated on 8-Mar-2024

    Summary

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    Official Symbol
    APBA1provided by VGNC
    Official Full Name
    amyloid beta precursor protein binding family A member 1provided by VGNC
    Primary source
    VGNC:VGNC:85399
    See related
    Ensembl:ENSSSCG00000005250
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Biased expression in ovary (RPKM 15.4), spleen (RPKM 1.9) and 2 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (222758508..222990000, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (249028220..249062572, complement)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110255668 Neighboring gene endosomal transmembrane epsin interactor 1 Neighboring gene protein prenyltransferase alpha subunit repeat containing 1 Neighboring gene cilia and flagella associated protein 95

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables amyloid-beta binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in dendritic spine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amyloid beta A4 precursor protein-binding family A member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      222758508..222990000 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021064677.1 → XP_020920336.1  amyloid beta A4 precursor protein-binding family A member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8D0LV52, A0A8D0VRN8, F1SJD2
      Related
      ENSSSCP00000005642.3, ENSSSCT00000005785.4
      Conserved Domains (3) summary
      cd00992
      Location:745 → 818
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd01208
      Location:452 → 623
      PTB_X11; X11-like Phosphotyrosine-binding (PTB) domain
      pfam00595
      Location:656 → 739
      PDZ; PDZ domain (Also known as DHR or GLGF)

    2. XM_021064697.1 → XP_020920356.1  amyloid beta A4 precursor protein-binding family A member 1 isoform X2

      UniProtKB/TrEMBL
      A0A8D0LW36, A0A8D1PDP3
      Related
      ENSSSCP00000071671.1, ENSSSCT00000071169.2
      Conserved Domains (3) summary
      cd00992
      Location:734 → 807
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd01208
      Location:452 → 612
      PTB_X11; X11-like Phosphotyrosine-binding (PTB) domain
      pfam00595
      Location:645 → 728
      PDZ; PDZ domain (Also known as DHR or GLGF)

    3. XM_021064688.1 → XP_020920347.1  amyloid beta A4 precursor protein-binding family A member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8D0LV52, A0A8D0VRN8, F1SJD2
      Conserved Domains (3) summary
      cd00992
      Location:745 → 818
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd01208
      Location:452 → 623
      PTB_X11; X11-like Phosphotyrosine-binding (PTB) domain
      pfam00595
      Location:656 → 739
      PDZ; PDZ domain (Also known as DHR or GLGF)

    4. XM_021064701.1 → XP_020920360.1  amyloid beta A4 precursor protein-binding family A member 1 isoform X2

      UniProtKB/TrEMBL
      A0A8D0LW36, A0A8D1PDP3
      Conserved Domains (3) summary
      cd00992
      Location:734 → 807
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd01208
      Location:452 → 612
      PTB_X11; X11-like Phosphotyrosine-binding (PTB) domain
      pfam00595
      Location:645 → 728
      PDZ; PDZ domain (Also known as DHR or GLGF)

    5. XM_021064683.1 → XP_020920342.1  amyloid beta A4 precursor protein-binding family A member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8D0LV52, A0A8D0VRN8, F1SJD2
      Conserved Domains (3) summary
      cd00992
      Location:745 → 818
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd01208
      Location:452 → 623
      PTB_X11; X11-like Phosphotyrosine-binding (PTB) domain
      pfam00595
      Location:656 → 739
      PDZ; PDZ domain (Also known as DHR or GLGF)
    Nucleotide Protein
    Heading Accession and Version

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