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    APBA1 amyloid beta precursor protein binding family A member 1 [ Sus scrofa (pig) ]

    Gene ID: 100513711, updated on 2-Oct-2018

    Summary

    Gene symbol
    APBA1
    Gene description
    amyloid beta precursor protein binding family A member 1
    See related
    Ensembl:ENSSSCG00000005250
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Biased expression in ovary (RPKM 15.4), spleen (RPKM 1.9) and 2 other tissues See more
    Orthologs

    Genomic context

    See APBA1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (222758508..222990000, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (249028220..249062572, complement)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110255668 Neighboring gene family with sequence similarity 189 member A2 Neighboring gene protein prenyltransferase alpha subunit repeat containing 1 Neighboring gene chromosome 1 C9orf135 homolog

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General protein information

    Preferred Names
    amyloid beta A4 precursor protein-binding family A member 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      222758508..222990000 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021064677.1XP_020920336.1  amyloid beta A4 precursor protein-binding family A member 1 isoform X1

      Related
      ENSSSCP00000005642.3, ENSSSCT00000005785.3
      Conserved Domains (3) summary
      cd00992
      Location:745818
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd01208
      Location:452623
      PTB_X11; X11-like Phosphotyrosine-binding (PTB) domain
      pfam00595
      Location:656739
      PDZ; PDZ domain (Also known as DHR or GLGF)
    2. XM_021064697.1XP_020920356.1  amyloid beta A4 precursor protein-binding family A member 1 isoform X2

      Related
      ENSSSCP00000019515.2, ENSSSCT00000025216.2
      Conserved Domains (3) summary
      cd00992
      Location:734807
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd01208
      Location:452612
      PTB_X11; X11-like Phosphotyrosine-binding (PTB) domain
      pfam00595
      Location:645728
      PDZ; PDZ domain (Also known as DHR or GLGF)
    3. XM_021064688.1XP_020920347.1  amyloid beta A4 precursor protein-binding family A member 1 isoform X1

      Conserved Domains (3) summary
      cd00992
      Location:745818
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd01208
      Location:452623
      PTB_X11; X11-like Phosphotyrosine-binding (PTB) domain
      pfam00595
      Location:656739
      PDZ; PDZ domain (Also known as DHR or GLGF)
    4. XM_021064701.1XP_020920360.1  amyloid beta A4 precursor protein-binding family A member 1 isoform X2

      Conserved Domains (3) summary
      cd00992
      Location:734807
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd01208
      Location:452612
      PTB_X11; X11-like Phosphotyrosine-binding (PTB) domain
      pfam00595
      Location:645728
      PDZ; PDZ domain (Also known as DHR or GLGF)
    5. XM_021064683.1XP_020920342.1  amyloid beta A4 precursor protein-binding family A member 1 isoform X1

      Conserved Domains (3) summary
      cd00992
      Location:745818
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd01208
      Location:452623
      PTB_X11; X11-like Phosphotyrosine-binding (PTB) domain
      pfam00595
      Location:656739
      PDZ; PDZ domain (Also known as DHR or GLGF)
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