Format

Send to:

Choose Destination
    • Showing Current items.

    LHX1 LIM homeobox 1 [ Sus scrofa (pig) ]

    Gene ID: 100513681, updated on 2-Oct-2018

    Summary

    Gene symbol
    LHX1
    Gene description
    LIM homeobox 1
    See related
    Ensembl:ENSSSCG00000017692
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Biased expression in kidney (RPKM 10.9), mixtures (RPKM 1.8) and 1 other tissue See more
    Orthologs

    Genomic context

    See LHX1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (38450708..38457583)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (40067286..40073812)

    Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110256040 Neighboring gene uncharacterized LOC110255902 Neighboring gene apoptosis antagonizing transcription factor Neighboring gene acetyl-CoA carboxylase alpha Neighboring gene chromosome 12 C17orf78 homolog

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

      Range
      38450708..38457583
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003131706.4XP_003131754.1  LIM/homeobox protein Lhx1

      See identical proteins and their annotated locations for XP_003131754.1

      UniProtKB/TrEMBL
      F2Z531
      Related
      ENSSSCP00000018746.2, ENSSSCT00000019256.3
      Conserved Domains (4) summary
      cd09367
      Location:455
      LIM1_Lhx1_Lhx5; The first LIM domain of Lhx1 (also known as Lim1) and Lhx5
      cd09375
      Location:63118
      LIM2_Lhx1_Lhx5; The second LIM domain of Lhx1 (also known as Lim1) and Lhx5
      pfam00046
      Location:183236
      Homeobox; Homeobox domain
      cl28271
      Location:263382
      dnaA; chromosomal replication initiation protein; Provisional
    Support Center