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    ATF2 activating transcription factor 2 [ Sus scrofa (pig) ]

    Gene ID: 100513441, updated on 2-Oct-2018

    Summary

    Gene symbol
    ATF2
    Gene description
    activating transcription factor 2
    See related
    Ensembl:ENSSSCG00000038076
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in kidney (RPKM 12.1), lung (RPKM 11.1) and 8 other tissues See more
    Orthologs

    Genomic context

    See ATF2 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (80984969..81076573, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 15 NC_010457.4 (90260285..90303424, complement)

    Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene cholinergic receptor nicotinic alpha 1 subunit Neighboring gene chimerin 1 Neighboring gene ATP synthase membrane subunit c locus 3 Neighboring gene uncharacterized LOC110257190

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General protein information

    Preferred Names
    cyclic AMP-dependent transcription factor ATF-2

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

      Range
      80984969..81076573 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021075925.1XP_020931584.1  cyclic AMP-dependent transcription factor ATF-2 isoform X1

      Related
      ENSSSCP00000058989.1, ENSSSCT00000047269.1
      Conserved Domains (4) summary
      cd12192
      Location:65102
      GCN4_cent; GCN4 central activation domain-like acidic activation domain
      cd14687
      Location:354414
      bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
      sd00019
      Location:2749
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl26464
      Location:107339
      Atrophin-1; Atrophin-1 family
    2. XM_021075927.1XP_020931586.1  cyclic AMP-dependent transcription factor ATF-2 isoform X3

      Related
      ENSSSCP00000016924.3, ENSSSCT00000017391.3
      Conserved Domains (4) summary
      cd12192
      Location:944
      GCN4_cent; GCN4 central activation domain-like acidic activation domain
      cd14687
      Location:296356
      bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
      cl26386
      Location:144272
      DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
      cl26464
      Location:50230
      Atrophin-1; Atrophin-1 family
    3. XM_021075926.1XP_020931585.1  cyclic AMP-dependent transcription factor ATF-2 isoform X2

      Conserved Domains (3) summary
      cd12192
      Location:1552
      GCN4_cent; GCN4 central activation domain-like acidic activation domain
      cd14687
      Location:304364
      bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
      cl26464
      Location:58238
      Atrophin-1; Atrophin-1 family
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