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    LIMS1 LIM zinc finger domain containing 1 [ Sus scrofa (pig) ]

    Gene ID: 100511559, updated on 2-Oct-2018

    Summary

    Gene symbol
    LIMS1
    Gene description
    LIM zinc finger domain containing 1
    See related
    Ensembl:ENSSSCG00000008137
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in lung (RPKM 8.8), spleen (RPKM 7.9) and 8 other tissues See more
    Orthologs

    Genomic context

    See LIMS1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (47607737..47704921, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (49748396..49812059)

    Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 138 Neighboring gene E3 SUMO-protein ligase RanBP2 Neighboring gene tubulin alpha-1C chain-like Neighboring gene GRIP and coiled-coil domain containing 2 Neighboring gene sulfotransferase 1C4

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General protein information

    Preferred Names
    LIM and senescent cell antigen-like-containing domain protein 1
    Names
    LIM and senescent cell antigen-like domains 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001243858.1NP_001230787.1  LIM and senescent cell antigen-like-containing domain protein 1

      Status: VALIDATED

      Source sequence(s)
      AJ938657, AJ944567, DB790438, EW054356, EW055478, FS669064
      Conserved Domains (5) summary
      cd09331
      Location:1068
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:71122
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:135185
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:191244
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:252305
      LIM5_PINCH; The fifth LIM domain of protein PINCH

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

      Range
      47607737..47704921 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021085645.1XP_020941304.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X6

      Conserved Domains (5) summary
      cd09331
      Location:2280
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:83134
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:147197
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:203256
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:264317
      LIM5_PINCH; The fifth LIM domain of protein PINCH
    2. XM_021085644.1XP_020941303.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X5

      Related
      ENSSSCP00000008688.3, ENSSSCT00000008914.3
      Conserved Domains (5) summary
      cd09331
      Location:2280
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:83134
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:147197
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:203256
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:264317
      LIM5_PINCH; The fifth LIM domain of protein PINCH
    3. XM_005662322.3XP_005662379.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A287BG02
      Related
      ENSSSCP00000054985.1, ENSSSCT00000046796.1
      Conserved Domains (5) summary
      cd09331
      Location:1068
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:71122
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:135185
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:191244
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:252305
      LIM5_PINCH; The fifth LIM domain of protein PINCH
    4. XM_021085646.1XP_020941305.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X8

      Related
      ENSSSCP00000059461.1, ENSSSCT00000043323.1
      Conserved Domains (5) summary
      cd09331
      Location:1068
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:71122
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:135185
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:191244
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:252305
      LIM5_PINCH; The fifth LIM domain of protein PINCH
    5. XM_005662320.3XP_005662377.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

      Conserved Domains (5) summary
      cd09331
      Location:49107
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:110161
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:174224
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:230283
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:291344
      LIM5_PINCH; The fifth LIM domain of protein PINCH
    6. XM_005662321.3XP_005662378.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X4

      Conserved Domains (5) summary
      cd09331
      Location:49107
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:110161
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:174224
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:230283
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:291344
      LIM5_PINCH; The fifth LIM domain of protein PINCH
    7. XM_005662317.3XP_005662374.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005662374.1

      Conserved Domains (5) summary
      cd09331
      Location:71129
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:132183
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:196246
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:252305
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:313366
      LIM5_PINCH; The fifth LIM domain of protein PINCH
    8. XM_005662319.3XP_005662376.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X2

      Conserved Domains (5) summary
      cd09331
      Location:71129
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:132183
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:196246
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:252305
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:313366
      LIM5_PINCH; The fifth LIM domain of protein PINCH
    9. XM_021085642.1XP_020941301.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X1

      Conserved Domains (5) summary
      cd09331
      Location:71129
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:132183
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:196246
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:252305
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:313366
      LIM5_PINCH; The fifth LIM domain of protein PINCH
    10. XM_021085647.1XP_020941306.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X9

      Conserved Domains (1) summary
      cd09331
      Location:71113
      LIM1_PINCH; The first LIM domain of protein PINCH
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