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    HDAC5 histone deacetylase 5 [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 100458256, updated on 9-Oct-2018

    Summary

    Gene symbol
    HDAC5
    Gene description
    histone deacetylase 5
    Locus tag
    CR201_G0023683
    See related
    Ensembl:ENSPPYG00000008342
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Also known as
    HD5
    Orthologs

    Genomic context

    See HDAC5 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    103 current Susie_PABv2 (GCF_002880775.1) 17 NC_036920.1 (51633087..51680465, complement)
    102 previous assembly P_pygmaeus_2.0.2 (GCF_000001545.4) 17 NC_012608.1 (45335013..45382754)

    Chromosome 17 - NC_036920.1Genomic Context describing neighboring genes Neighboring gene LSM12 homolog Neighboring gene glucose-6-phosphatase catalytic subunit 3 Neighboring gene uncharacterized LOC112129651 Neighboring gene U6 spliceosomal RNA Neighboring gene chromosome 17 C17orf53 homolog

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Alcoholism, organism-specific biosystem (from KEGG)
      Alcoholism, organism-specific biosystemAlcoholism, also called dependence on alcohol (ethanol), is a chronic relapsing disorder that is progressive and has serious detrimental health outcomes. As one of the primary mediators of the reward...
    • Alcoholism, conserved biosystem (from KEGG)
      Alcoholism, conserved biosystemAlcoholism, also called dependence on alcohol (ethanol), is a chronic relapsing disorder that is progressive and has serious detrimental health outcomes. As one of the primary mediators of the reward...
    • Apelin signaling pathway, organism-specific biosystem (from KEGG)
      Apelin signaling pathway, organism-specific biosystemApelin is an endogenous peptide capable of binding the apelin receptor (APJ), which was originally described as an orphan G-protein-coupled receptor. Apelin and APJ are widely expressed in various ti...
    • Epstein-Barr virus infection, organism-specific biosystem (from KEGG)
      Epstein-Barr virus infection, organism-specific biosystemEpstein-Barr virus (EBV) is a ubiquitous human herpesvirus that is associated with oncogenesis. EBV infection to primary human B lymphocytes leads to induction of EBV-specific HLA-restricted cytotoxi...
    • Epstein-Barr virus infection, conserved biosystem (from KEGG)
      Epstein-Barr virus infection, conserved biosystemEpstein-Barr virus (EBV) is a ubiquitous human herpesvirus that is associated with oncogenesis. EBV infection to primary human B lymphocytes leads to induction of EBV-specific HLA-restricted cytotoxi...
    • Viral carcinogenesis, organism-specific biosystem (from KEGG)
      Viral carcinogenesis, organism-specific biosystemThere is a strong association between viruses and the development of human malignancies. We now know that at least six human viruses, Epstein-Barr virus (EBV), hepatitis B virus (HBV), hepatitis C vi...
    • Viral carcinogenesis, conserved biosystem (from KEGG)
      Viral carcinogenesis, conserved biosystemThere is a strong association between viruses and the development of human malignancies. We now know that at least six human viruses, Epstein-Barr virus (EBV), hepatitis B virus (HBV), hepatitis C vi...

    General gene information

    Markers

    Homology

    Clone Names

    • DKFZp459O115

    General protein information

    Preferred Names
    histone deacetylase 5
    XP_024090900.1
    XP_024090901.1
    XP_024090902.1
    XP_024090903.1
    XP_024090904.1
    XP_024090905.1
    XP_024090906.1
    XP_024090907.1
    XP_024090908.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pongo abelii Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Susie_PABv2 Primary Assembly

    Genomic

    1. NC_036920.1 Reference Susie_PABv2 Primary Assembly

      Range
      51633087..51680465 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024235134.1XP_024090902.1  histone deacetylase 5 isoform X3

      Conserved Domains (2) summary
      cd10164
      Location:69165
      ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
      cd10007
      Location:6751091
      HDAC5; Histone deacetylase 5
    2. XM_024235136.1XP_024090904.1  histone deacetylase 5 isoform X5

      Conserved Domains (2) summary
      cd10007
      Location:6701086
      HDAC5; Histone deacetylase 5
      cl25407
      Location:68155
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)
    3. XM_024235135.1XP_024090903.1  histone deacetylase 5 isoform X4

      Conserved Domains (2) summary
      cd10007
      Location:6711087
      HDAC5; Histone deacetylase 5
      cl25407
      Location:69156
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)
    4. XM_024235132.1XP_024090900.1  histone deacetylase 5 isoform X1

      Conserved Domains (2) summary
      cd10164
      Location:69165
      ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
      cd10007
      Location:6801096
      HDAC5; Histone deacetylase 5
    5. XM_024235139.1XP_024090907.1  histone deacetylase 5 isoform X2

      Conserved Domains (2) summary
      cd10164
      Location:68164
      ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
      cd10007
      Location:6791095
      HDAC5; Histone deacetylase 5
    6. XM_024235138.1XP_024090906.1  histone deacetylase 5 isoform X6

      Conserved Domains (2) summary
      cd10164
      Location:27123
      ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
      cl17011
      Location:6381054
      Arginase_HDAC; Arginase-like and histone-like hydrolases
    7. XM_024235137.1XP_024090905.1  histone deacetylase 5 isoform X6

      Conserved Domains (2) summary
      cd10164
      Location:27123
      ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
      cl17011
      Location:6381054
      Arginase_HDAC; Arginase-like and histone-like hydrolases
    8. XM_024235133.1XP_024090901.1  histone deacetylase 5 isoform X2

      Conserved Domains (2) summary
      cd10164
      Location:68164
      ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
      cd10007
      Location:6791095
      HDAC5; Histone deacetylase 5
    9. XM_024235140.1XP_024090908.1  histone deacetylase 5 isoform X7

      Conserved Domains (2) summary
      cd10007
      Location:6661082
      HDAC5; Histone deacetylase 5
      cl25407
      Location:69156
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)
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