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    KDM5B lysine demethylase 5B [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100356218, updated on 3-Apr-2017

    Summary

    Gene symbol
    KDM5B
    Gene description
    lysine demethylase 5B
    See related
    Ensembl:ENSOCUG00000008003
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs

    Genomic context

    See KDM5B in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    102 current OryCun2.0 (GCF_000003625.3) 16 NC_013684.1 (68937072..69013370)

    Chromosome 16 - NC_013684.1Genomic Context describing neighboring genes Neighboring gene tubulin alpha-8 chain-like Neighboring gene 10 kDa heat shock protein, mitochondrial pseudogene Neighboring gene protein mago nashi homolog pseudogene Neighboring gene alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein MGAT4E Neighboring gene synaptotagmin 2 Neighboring gene protein phosphatase 1 regulatory subunit 12B Neighboring gene dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_013684.1 Chromosome 16 Reference OryCun2.0 Primary Assembly

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General protein information

    Preferred Names
    lysine-specific demethylase 5B
    Names
    jumonji, AT rich interactive domain 1B
    lysine (K)-specific demethylase 5B

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Oryctolagus cuniculus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference OryCun2.0 Primary Assembly

    Genomic

    1. NC_013684.1 Reference OryCun2.0 Primary Assembly

      Range
      68937072..69013370
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008268570.2XP_008266792.1  lysine-specific demethylase 5B isoform X2

      Conserved Domains (9) summary
      smart00501
      Location:98188
      BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
      smart00545
      Location:3172
      JmjN; Small domain found in the jumonji family of transcription factors
      pfam02373
      Location:486602
      JmjC; JmjC domain, hydroxylase
      COG5034
      Location:10361222
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15603
      Location:311356
      PHD1_KDM5B; PHD finger 1 found in lysine-specific demethylase 5B (KDM5B)
      cd15607
      Location:11781221
      PHD2_KDM5B; PHD finger 2 found in lysine-specific demethylase 5B (KDM5B)
      cd15687
      Location:14781527
      PHD3_KDM5B; PHD finger 3 found in lysine-specific demethylase 5B (KDM5B)
      pfam02928
      Location:692744
      zf-C5HC2; C5HC2 zinc finger
      pfam08429
      Location:7571086
      PLU-1; PLU-1-like protein
    2. XM_002717590.3XP_002717636.1  lysine-specific demethylase 5B isoform X1

      UniProtKB/TrEMBL
      G1SUA1
      Related
      ENSOCUP00000006924.2, ENSOCUT00000008011.3
      Conserved Domains (8) summary
      smart00501
      Location:98188
      BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
      smart00545
      Location:3172
      JmjN; Small domain found in the jumonji family of transcription factors
      pfam02373
      Location:486602
      JmjC; JmjC domain, hydroxylase
      cd15603
      Location:311356
      PHD1_KDM5B; PHD finger 1 found in lysine-specific demethylase 5B (KDM5B)
      cd15607
      Location:11781221
      PHD2_KDM5B; PHD finger 2 found in lysine-specific demethylase 5B (KDM5B)
      cd15687
      Location:14791528
      PHD3_KDM5B; PHD finger 3 found in lysine-specific demethylase 5B (KDM5B)
      pfam02928
      Location:692744
      zf-C5HC2; C5HC2 zinc finger
      pfam08429
      Location:7571086
      PLU-1; PLU-1-like protein
    3. XM_008268571.2XP_008266793.1  lysine-specific demethylase 5B isoform X4

      Conserved Domains (7) summary
      smart00501
      Location:32122
      BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
      pfam02373
      Location:420536
      JmjC; JmjC domain, hydroxylase
      cd15603
      Location:245290
      PHD1_KDM5B; PHD finger 1 found in lysine-specific demethylase 5B (KDM5B)
      cd15607
      Location:11121155
      PHD2_KDM5B; PHD finger 2 found in lysine-specific demethylase 5B (KDM5B)
      cd15687
      Location:14131462
      PHD3_KDM5B; PHD finger 3 found in lysine-specific demethylase 5B (KDM5B)
      pfam02928
      Location:626678
      zf-C5HC2; C5HC2 zinc finger
      pfam08429
      Location:6911020
      PLU-1; PLU-1-like protein
    4. XM_017347852.1XP_017203341.1  lysine-specific demethylase 5B isoform X3

    5. XM_017347853.1XP_017203342.1  lysine-specific demethylase 5B isoform X5

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