Format

Send to:

Choose Destination
    • Showing Current items.

    A1CF APOBEC1 complementation factor [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 100174508, updated on 8-Oct-2018

    Summary

    Gene symbol
    A1CF
    Gene description
    APOBEC1 complementation factor
    Locus tag
    CR201_G0008306
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Also known as
    ACF
    Orthologs

    Genomic context

    See A1CF in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current Susie_PABv2 (GCF_002880775.1) 10 NC_036913.1 (84909914..84992849)
    102 previous assembly P_pygmaeus_2.0.2 (GCF_000001545.4) 10 Unlocalized Scaffold NW_002947328.1 (108086..190963, complement)

    Chromosome 10 - NC_036913.1Genomic Context describing neighboring genes Neighboring gene protein kinase cGMP-dependent 1 Neighboring gene ras suppressor protein 1 pseudogene Neighboring gene coiled-coil domain-containing protein 58 pseudogene Neighboring gene putative inactive neutral ceramidase B Neighboring gene sphingomyelin synthase 1 Neighboring gene U7 small nuclear RNA

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    Clone Names

    • DKFZp469H226

    General protein information

    Preferred Names
    APOBEC1 complementation factor
    Names
    APOBEC1-stimulating protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001133965.1NP_001127437.1  APOBEC1 complementation factor

      See identical proteins and their annotated locations for NP_001127437.1

      Status: PROVISIONAL

      Source sequence(s)
      CR859414
      UniProtKB/Swiss-Prot
      Q5R9H4
      Conserved Domains (5) summary
      cd12486
      Location:55132
      RRM1_ACF; RNA recognition motif 1 found in vertebrate APOBEC-1 complementation factor (ACF)
      cd12490
      Location:134218
      RRM2_ACF; RNA recognition motif 2 in vertebrate APOBEC-1 complementation factor (ACF)
      cd12498
      Location:223305
      RRM3_ACF; RNA recognition motif 3 in vertebrate APOBEC-1 complementation factor (ACF)
      TIGR01648
      Location:2587
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
      pfam14709
      Location:439515
      DND1_DSRM; double strand RNA binding domain from DEAD END PROTEIN 1

    RefSeqs of Annotated Genomes: Pongo abelii Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Susie_PABv2 Primary Assembly

    Genomic

    1. NC_036913.1 Reference Susie_PABv2 Primary Assembly

      Range
      84909914..84992849
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009236021.1XP_009234296.1  APOBEC1 complementation factor isoform X2

      See identical proteins and their annotated locations for XP_009234296.1

      Conserved Domains (5) summary
      cd12486
      Location:29106
      RRM1_ACF; RNA recognition motif 1 found in vertebrate APOBEC-1 complementation factor (ACF)
      cd12490
      Location:108192
      RRM2_ACF; RNA recognition motif 2 in vertebrate APOBEC-1 complementation factor (ACF)
      cd12498
      Location:197279
      RRM3_ACF; RNA recognition motif 3 in vertebrate APOBEC-1 complementation factor (ACF)
      TIGR01648
      Location:5561
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
      pfam14709
      Location:413489
      DND1_DSRM; double strand RNA binding domain from DEAD END PROTEIN 1
    2. XM_009236018.1XP_009234293.1  APOBEC1 complementation factor isoform X1

      Conserved Domains (1) summary
      TIGR01648
      Location:2595
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    Support Center