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    SRSF1 serine and arginine rich splicing factor 1 [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 100173318, updated on 7-Oct-2018

    Summary

    Gene symbol
    SRSF1
    Gene description
    serine and arginine rich splicing factor 1
    Locus tag
    CR201_G0012126
    See related
    Ensembl:ENSPPYG00000008240
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Also known as
    SFRS1
    Orthologs

    Genomic context

    See SRSF1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Susie_PABv2 (GCF_002880775.1) 17 NC_036920.1 (35011950..35016683)
    102 previous assembly P_pygmaeus_2.0.2 (GCF_000001545.4) 17 NC_012608.1 (34132751..34139169)

    Chromosome 17 - NC_036920.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 4D1 Neighboring gene dynein light chain LC8-type 2 Neighboring gene translation initiation factor IF-2-like Neighboring gene vascular endothelial zinc finger 1 Neighboring gene CUE domain containing 1

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Herpes simplex infection, organism-specific biosystem (from KEGG)
      Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
    • Herpes simplex infection, conserved biosystem (from KEGG)
      Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
    • IL-17 signaling pathway, organism-specific biosystem (from KEGG)
      IL-17 signaling pathway, organism-specific biosystemThe interleukin 17 (IL-17) family, a subset of cytokines consisting of IL-17A-F, plays crucial roles in both acute and chronic inflammatory responses. IL-17A, the hallmark cytokine of the newly defi...
    • IL-17 signaling pathway, conserved biosystem (from KEGG)
      IL-17 signaling pathway, conserved biosystemThe interleukin 17 (IL-17) family, a subset of cytokines consisting of IL-17A-F, plays crucial roles in both acute and chronic inflammatory responses. IL-17A, the hallmark cytokine of the newly defi...
    • Spliceosome, organism-specific biosystem (from KEGG)
      Spliceosome, organism-specific biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
    • Spliceosome, conserved biosystem (from KEGG)
      Spliceosome, conserved biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...

    General gene information

    Markers

    Homology

    Clone Names

    • DKFZp469K2419

    General protein information

    Preferred Names
    serine/arginine-rich splicing factor 1
    Names
    splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001132865.1NP_001126337.1  serine/arginine-rich splicing factor 1

      See identical proteins and their annotated locations for NP_001126337.1

      Status: PROVISIONAL

      Source sequence(s)
      CR860145
      UniProtKB/Swiss-Prot
      Q5R7H2
      Related
      ENSPPYP00000009258, ENSPPYT00000009632
      Conserved Domains (3) summary
      COG0724
      Location:888
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12597
      Location:1790
      RRM1_SRSF1; RNA recognition motif 1 in serine/arginine-rich splicing factor 1 (SRSF1) and similar proteins
      cd12601
      Location:121193
      RRM2_SRSF1_like; RNA recognition motif 2 in serine/arginine-rich splicing factor SRSF1, SRSF9 and similar proteins

    RefSeqs of Annotated Genomes: Pongo abelii Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Susie_PABv2 Primary Assembly

    Genomic

    1. NC_036920.1 Reference Susie_PABv2 Primary Assembly

      Range
      35011950..35016683
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_002911928.1 RNA Sequence

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