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    cabp1 calcium binding protein 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100135743, updated on 20-Jun-2018

    Summary

    Official Symbol
    cabp1provided by Xenbase
    Official Full Name
    calcium binding protein 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-854621
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    calbrain; hcalb_br; caldendrin
    Orthologs

    Genomic context

    See cabp1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (143277514..143308264)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668232.1 (56121356..56152100, complement)

    Chromosome 1 - NC_030677.1Genomic Context describing neighboring genes Neighboring gene coenzyme Q5, methyltransferase Neighboring gene ring finger protein 10 Neighboring gene POP5 homolog, ribonuclease P/MRP subunit Neighboring gene malectin Neighboring gene unc-119 lipid binding chaperone B

    Genomic regions, transcripts, and products

    General gene information

    Homology

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001114265.1NP_001107737.1  calcium-binding protein 1

      See identical proteins and their annotated locations for NP_001107737.1

      Status: PROVISIONAL

      Source sequence(s)
      BC158533
      UniProtKB/TrEMBL
      B0BMR4
      Conserved Domains (2) summary
      PTZ00184
      Location:57204
      PTZ00184; calmodulin; Provisional
      cd00051
      Location:142205
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030677.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      143277514..143308264
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012954575.2XP_012810029.1  calcium-binding protein 1 isoform X1

      Conserved Domains (2) summary
      PTZ00184
      Location:252399
      PTZ00184; calmodulin; Provisional
      cd00051
      Location:337400
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    2. XM_012954610.2XP_012810064.1  calcium-binding protein 1 isoform X2

      Conserved Domains (2) summary
      PTZ00184
      Location:96243
      PTZ00184; calmodulin; Provisional
      cd00051
      Location:181244
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    3. XM_012954679.2XP_012810133.1  calcium-binding protein 1 isoform X4

      Conserved Domains (2) summary
      PTZ00184
      Location:42189
      PTZ00184; calmodulin; Provisional
      cd00051
      Location:127190
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    4. XM_012954644.1XP_012810098.1  calcium-binding protein 1 isoform X3

      See identical proteins and their annotated locations for XP_012810098.1

      UniProtKB/TrEMBL
      B0BMR4
      Conserved Domains (2) summary
      PTZ00184
      Location:57204
      PTZ00184; calmodulin; Provisional
      cd00051
      Location:142205
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
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