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    Tnf tumor necrosis factor [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100135630, updated on 27-Jun-2018

    Summary

    Gene symbol
    Tnf
    Gene description
    tumor necrosis factor
    See related
    Ensembl:ENSCPOG00000002343
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Also known as
    TNFA; TNFSF2; TNLG1F
    Orthologs

    Genomic context

    See Tnf in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176404.1 (41351534..41354077, complement)

    NT_176404.1Genomic Context describing neighboring genes Neighboring gene leukocyte specific transcript 1 Neighboring gene lymphotoxin beta Neighboring gene lymphotoxin alpha Neighboring gene uncharacterized LOC106028532 Neighboring gene NFKB inhibitor like 1

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NT_176404 Unplaced Scaffold Reference Cavpor3.0 Primary Assembly

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General protein information

    Preferred Names
    tumor necrosis factor
    Names
    TNF-a
    TNF-alpha
    cachectin
    tumor necrosis factor alpha
    tumor necrosis factor ligand 1F
    tumor necrosis factor ligand superfamily member 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001173025.1NP_001166496.1  tumor necrosis factor

      See identical proteins and their annotated locations for NP_001166496.1

      Status: PROVISIONAL

      Source sequence(s)
      U77036
      UniProtKB/Swiss-Prot
      P51435
      UniProtKB/TrEMBL
      A0A0U5J7Z4
      Related
      ENSCPOP00000025263.1, ENSCPOT00000032736.1
      Conserved Domains (1) summary
      pfam00229
      Location:104234
      TNF; TNF(Tumour Necrosis Factor) family

    RefSeqs of Annotated Genomes: Cavia porcellus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cavpor3.0 Primary Assembly

    Genomic

    1. NT_176404.1 Reference Cavpor3.0 Primary Assembly

      Range
      41351534..41354077 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023566604.1XP_023422372.1  tumor necrosis factor isoform X2

      Conserved Domains (1) summary
      pfam00229
      Location:105235
      TNF; TNF(tumor Necrosis Factor) family
    2. XM_013156532.1XP_013011986.1  tumor necrosis factor isoform X1

      UniProtKB/TrEMBL
      A0A2C9F1D8
      Related
      ENSCPOP00000002129.3, ENSCPOT00000002375.3
      Conserved Domains (1) summary
      pfam00229
      Location:103233
      TNF; TNF(Tumour Necrosis Factor) family
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