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    clock clock circadian regulator [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100038163, updated on 20-Jun-2018

    Summary

    Official Symbol
    clockprovided by Xenbase
    Official Full Name
    clock circadian regulatorprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-495448
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    clk; Xclk; XClock
    Orthologs

    Genomic context

    See clock in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (31203829..31249239, complement)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668232.1 (183413060..183458375)

    Chromosome 1 - NC_030677.1Genomic Context describing neighboring genes Neighboring gene steroid 5 alpha-reductase 3 Neighboring gene transmembrane protein 165 Neighboring gene neuromedin U Neighboring gene uncharacterized LOC100487667 Neighboring gene exocyst complex component 1 like

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    • Herpes simplex infection, organism-specific biosystem (from KEGG)
      Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
    • Herpes simplex infection, conserved biosystem (from KEGG)
      Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...

    General gene information

    Homology

    General protein information

    Preferred Names
    circadian locomoter output cycles protein kaput
    Names
    clock homolog
    NP_001122127.1
    XP_017947152.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001128655.1NP_001122127.1  circadian locomoter output cycles protein kaput

      See identical proteins and their annotated locations for NP_001122127.1

      Status: PROVISIONAL

      Source sequence(s)
      BC167652
      UniProtKB/TrEMBL
      B3DM05
      Conserved Domains (4) summary
      cd00083
      Location:2377
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
      cd00130
      Location:266364
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam13426
      Location:110211
      PAS_9; PAS domain
      pfam14598
      Location:265368
      PAS_11; PAS domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030677.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      31203829..31249239 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018091663.1XP_017947152.1  circadian locomoter output cycles protein kaput isoform X1

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