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    COL3A1 collagen type III alpha 1 chain [ Monodelphis domestica (gray short-tailed opossum) ]

    Gene ID: 100028423, updated on 17-Apr-2019

    Summary

    Gene symbol
    COL3A1
    Gene description
    collagen type III alpha 1 chain
    See related
    Ensembl:ENSMODG00000010811
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Monodelphis domestica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
    Orthologs

    Genomic context

    See COL3A1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    51
    Annotation release Status Assembly Chr Location
    103 current MonDom5 (GCF_000002295.2) 4 NC_008804.1 (205621617..205684306)

    Chromosome 4 - NC_008804.1Genomic Context describing neighboring genes Neighboring gene GULP PTB domain containing engulfment adaptor 1 Neighboring gene cofilin-2 pseudogene Neighboring gene uncharacterized LOC103093767 Neighboring gene collagen type V alpha 2 chain Neighboring gene WD repeat domain 75

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_008804.1 Chromosome 4 Reference MonDom5 Primary Assembly

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • AGE-RAGE signaling pathway in diabetic complications, organism-specific biosystem (from KEGG)
      AGE-RAGE signaling pathway in diabetic complications, organism-specific biosystemAdvanced glycation end products (AGEs) are a complex group of compounds produced through the non-enzymatic glycation and oxidation of proteins, lipids and nucleic acids, primarily due to aging and un...
    • AGE-RAGE signaling pathway in diabetic complications, conserved biosystem (from KEGG)
      AGE-RAGE signaling pathway in diabetic complications, conserved biosystemAdvanced glycation end products (AGEs) are a complex group of compounds produced through the non-enzymatic glycation and oxidation of proteins, lipids and nucleic acids, primarily due to aging and un...
    • Amoebiasis, organism-specific biosystem (from KEGG)
      Amoebiasis, organism-specific biosystemEntamoeba histolytica, an extracellular protozoan parasite is a human pathogen that invades the intestinal epithelium. Infection occurs on ingestion of contaminated water and food. The pathogenesis o...
    • Amoebiasis, conserved biosystem (from KEGG)
      Amoebiasis, conserved biosystemEntamoeba histolytica, an extracellular protozoan parasite is a human pathogen that invades the intestinal epithelium. Infection occurs on ingestion of contaminated water and food. The pathogenesis o...
    • Platelet activation, organism-specific biosystem (from KEGG)
      Platelet activation, organism-specific biosystemPlatelets play a key and beneficial role for primary hemostasis on the disruption of the integrity of vessel wall. Platelet adhesion and activation at sites of vascular wall injury is initiated by ad...
    • Protein digestion and absorption, organism-specific biosystem (from KEGG)
      Protein digestion and absorption, organism-specific biosystemProtein is a dietary component essential for nutritional homeostasis in humans. Normally, ingested protein undergoes a complex series of degradative processes following the action of gastric, pancrea...
    • Protein digestion and absorption, conserved biosystem (from KEGG)
      Protein digestion and absorption, conserved biosystemProtein is a dietary component essential for nutritional homeostasis in humans. Normally, ingested protein undergoes a complex series of degradative processes following the action of gastric, pancrea...

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    collagen alpha-1(III) chain
    Names
    collagen, type III, alpha 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Monodelphis domestica Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MonDom5 Primary Assembly

    Genomic

    1. NC_008804.1 Reference MonDom5 Primary Assembly

      Range
      205621617..205684306
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001378421.4XP_001378458.2  collagen alpha-1(III) chain

      Related
      ENSMODP00000013550.2, ENSMODT00000013799.2
      Conserved Domains (3) summary
      pfam01391
      Location:413472
      Collagen; Collagen triple helix repeat (20 copies)
      pfam00093
      Location:3586
      VWC; von Willebrand factor type C domain
      pfam01410
      Location:12281460
      COLFI; Fibrillar collagen C-terminal domain
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