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    atf2 activating transcription factor 2 [ Danio rerio (zebrafish) ]

    Gene ID: 100006516, updated on 14-Feb-2019

    Summary

    Official Symbol
    atf2provided by ZNC
    Official Full Name
    activating transcription factor 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030911-8
    See related
    Ensembl:ENSDARG00000023903
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    atf2l
    Orthologs

    Genomic context

    See atf2 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (2343115..2386094)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (2346370..2402122)
    103 previous assembly Zv9 (GCF_000002035.4) 9 NC_007120.5 (2338249..2379218)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene limb and neural patterns a Neighboring gene ATP synthase membrane subunit c locus 3a Neighboring gene uncharacterized LOC110440038 Neighboring gene chimerin 1 Neighboring gene WAS/WASL interacting protein family, member 1a

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    cyclic AMP-dependent transcription factor ATF-2
    XP_009302699.1
    XP_009302701.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      2343115..2386094
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009304424.3XP_009302699.1  cyclic AMP-dependent transcription factor ATF-2 isoform X1

      UniProtKB/TrEMBL
      F1QIZ9
      Related
      ENSDARP00000062291.6, ENSDART00000062292.7
      Conserved Domains (3) summary
      cd12192
      Location:4784
      GCN4_cent; GCN4 central activation domain-like acidic activation domain
      cd14687
      Location:341401
      bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
      sd00019
      Location:931
      ZF_C2H2; C2H2 Zn finger [structural motif]
    2. XM_009304426.3XP_009302701.1  cyclic AMP-dependent transcription factor ATF-2 isoform X2

      See identical proteins and their annotated locations for XP_009302701.1

      Conserved Domains (1) summary
      cd14687
      Location:154214
      bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
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