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    tead1b TEA domain family member 1b [ Danio rerio (zebrafish) ]

    Gene ID: 100006454, updated on 14-Feb-2019

    Summary

    Official Symbol
    tead1bprovided by ZNC
    Official Full Name
    TEA domain family member 1bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-091013-5
    See related
    Ensembl:ENSDARG00000059483
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    tead1
    Orthologs

    Genomic context

    See tead1b in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (65755920..65918549)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (65532381..65693790)
    103 previous assembly Zv9 (GCF_000002035.4) 7 NC_007118.5 (68133534..68174669, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 2a Neighboring gene parvin, alpha b Neighboring gene uncharacterized LOC101883932 Neighboring gene Ras association domain family member 10b

    Genomic regions, transcripts, and products

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA-binding transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    RNA polymerase II transcription factor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription regulatory region DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    hippo signaling IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    hippo signaling IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    transcription factor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    transcriptional enhancer factor TEF-1
    Names
    TEA domain family member 1 (SV40 transcriptional enhancer factor)

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      65755920..65918549
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009303581.3XP_009301856.1  transcriptional enhancer factor TEF-1 isoform X1

      See identical proteins and their annotated locations for XP_009301856.1

      Related
      ENSDARP00000125040.1, ENSDART00000150143.3
      Conserved Domains (1) summary
      smart00426
      Location:1279
      TEA; TEA domain
    2. XM_009303585.3XP_009301860.1  transcriptional enhancer factor TEF-1 isoform X3

      Conserved Domains (1) summary
      smart00426
      Location:1279
      TEA; TEA domain
    3. XM_009303584.3XP_009301859.1  transcriptional enhancer factor TEF-1 isoform X2

      Conserved Domains (1) summary
      smart00426
      Location:1279
      TEA; TEA domain
    4. XM_009303588.3XP_009301863.1  transcriptional enhancer factor TEF-1 isoform X6

      Conserved Domains (1) summary
      smart00426
      Location:1279
      TEA; TEA domain
    5. XM_021478026.1XP_021333701.1  transcriptional enhancer factor TEF-1 isoform X10

      Conserved Domains (1) summary
      smart00426
      Location:1279
      TEA; TEA domain
    6. XM_009303587.3XP_009301862.1  transcriptional enhancer factor TEF-1 isoform X5

      Related
      ENSDARP00000154949.1, ENSDART00000178627.2
      Conserved Domains (1) summary
      smart00426
      Location:1279
      TEA; TEA domain
    7. XM_009303583.3XP_009301858.1  transcriptional enhancer factor TEF-1 isoform X1

      See identical proteins and their annotated locations for XP_009301858.1

      Conserved Domains (1) summary
      smart00426
      Location:1279
      TEA; TEA domain
    8. XM_021478024.1XP_021333699.1  transcriptional enhancer factor TEF-1 isoform X8

      Conserved Domains (1) summary
      smart00426
      Location:1279
      TEA; TEA domain
    9. XM_009303586.3XP_009301861.1  transcriptional enhancer factor TEF-1 isoform X4

      Conserved Domains (1) summary
      smart00426
      Location:1279
      TEA; TEA domain
    10. XM_009303589.3XP_009301864.1  transcriptional enhancer factor TEF-1 isoform X7

      Related
      ENSDARP00000157650.1, ENSDART00000082740.6
      Conserved Domains (1) summary
      smart00426
      Location:1279
      TEA; TEA domain
    11. XM_021478025.1XP_021333700.1  transcriptional enhancer factor TEF-1 isoform X9

      Conserved Domains (1) summary
      smart00426
      Location:1279
      TEA; TEA domain
    12. XM_021478027.1XP_021333702.1  transcriptional enhancer factor TEF-1 isoform X11

      Conserved Domains (1) summary
      smart00426
      Location:1279
      TEA; TEA domain
    13. XM_009303582.3XP_009301857.1  transcriptional enhancer factor TEF-1 isoform X1

      See identical proteins and their annotated locations for XP_009301857.1

      Conserved Domains (1) summary
      smart00426
      Location:1279
      TEA; TEA domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394713.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      6855..48092
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021472029.1XP_021327704.1  transcriptional enhancer factor TEF-1 isoform X12

      Conserved Domains (1) summary
      cl02603
      Location:1847
      TEA; TEA/ATTS domain family
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