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    Cpt1b carnitine palmitoyltransferase 1b, muscle [ Mus musculus (house mouse) ]

    Gene ID: 12895, updated on 19-May-2018
    Official Symbol
    Cpt1bprovided by MGI
    Official Full Name
    carnitine palmitoyltransferase 1b, muscleprovided by MGI
    Primary source
    MGI:MGI:1098297
    See related
    Ensembl:ENSMUSG00000078937 Vega:OTTMUSG00000035434
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cpt1; Cpti; Cpt1-m; Cpti-m; M-cpti
    Expression
    Biased expression in heart adult (RPKM 181.3), testis adult (RPKM 117.6) and 6 other tissues See more
    Orthologs
    See Cpt1b in Genome Data Viewer
    Location:
    15 E3; 15 44.89 cM
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (89416405..89425862, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (89246836..89256293, complement)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene kelch domain containing 7B Neighboring gene synaptonemal complex central element protein 3 Neighboring gene predicted readthrough transcript (NMD candidate), 44502 Neighboring gene RIKEN cDNA C730034F03 gene Neighboring gene choline kinase beta

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Readthrough Gm44502

    Readthrough gene: Gm44502, Included gene: Chkb

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    carnitine O-palmitoyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    carnitine O-palmitoyltransferase activity TAS
    Traceable Author Statement
    more info
    PubMed 
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity, transferring acyl groups IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    fatty acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    long-chain fatty acid transport ISO
    Inferred from Sequence Orthology
    more info
     
    long-chain fatty acid transport TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrial outer membrane TAS
    Traceable Author Statement
    more info
    PubMed 
    mitochondrion HDA PubMed 
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    carnitine O-palmitoyltransferase 1, muscle isoform
    Names
    muscle-type carnitine palmitoyltransferase I
    NP_034078.2

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009948.2NP_034078.2  carnitine O-palmitoyltransferase 1, muscle isoform

      See identical proteins and their annotated locations for NP_034078.2

      Status: VALIDATED

      Source sequence(s)
      AK029141, CJ092541, CJ238532
      Consensus CDS
      CCDS27749.1
      UniProtKB/Swiss-Prot
      Q924X2
      Related
      ENSMUSP00000104936.2, OTTMUSP00000049742, ENSMUST00000109313.8, OTTMUST00000090606
      Conserved Domains (2) summary
      pfam00755
      Location:173761
      Carn_acyltransf; Choline/Carnitine o-acyltransferase
      pfam16484
      Location:146
      CPT_N; Carnitine O-palmitoyltransferase N-terminus

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

      Range
      89416405..89425862 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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