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    Hspa13 heat shock protein 70 family, member 13 [ Mus musculus (house mouse) ]

    Gene ID: 110920, updated on 12-Mar-2017
    Official Symbol
    Hspa13provided by MGI
    Official Full Name
    heat shock protein 70 family, member 13provided by MGI
    Primary source
    MGI:MGI:1309463
    See related
    Ensembl:ENSMUSG00000032932 Vega:OTTMUSG00000023583
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Stch; AV006182; 1600002I10Rik; B230217N24Rik
    Orthologs
    Location:
    16 C3.1; 16 43.36 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 16 NC_000082.6 (75755190..75767277, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (75755435..75767063, complement)

    Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 41474 Neighboring gene predicted gene, 30162 Neighboring gene predicted gene 15553 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene SAM domain, SH3 domain and nuclear localization signals, 1

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    extracellular exosome ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    heat shock 70 kDa protein 13
    Names
    heat shock protein 70kDa family, member 13
    microsomal stress-70 protein ATPase core
    stress 70 protein chaperone, microsome-associated, 60kD human homolog
    stress 70 protein chaperone, microsome-associated, human homolog
    stress-70 protein chaperone microsome-associated 60 kDa protein

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_030201.3NP_084477.1  heat shock 70 kDa protein 13 precursor

      See identical proteins and their annotated locations for NP_084477.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the functional protein.
      Source sequence(s)
      BC085181, BY133105, CO043820
      Consensus CDS
      CCDS28273.1
      UniProtKB/Swiss-Prot
      Q8BM72
      Related
      ENSMUSP00000048817, OTTMUSP00000027721, ENSMUST00000046283, OTTMUST00000057467
      Conserved Domains (2) summary
      cd10237
      Location:12463
      HSPA13-like_NBD; Nucleotide-binding domain of human HSPA13 and similar proteins
      PRK13930
      Location:32442
      PRK13930; rod shape-determining protein MreB; Provisional

    RNA

    1. NR_027492.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains an alternate exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AK030553, BC085181, BY133105, CO043820

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000082.6 Reference GRCm38.p4 C57BL/6J

      Range
      75755190..75767277 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006522849.2XP_006522912.1  heat shock 70 kDa protein 13 isoform X1

      See identical proteins and their annotated locations for XP_006522912.1

      UniProtKB/TrEMBL
      D3Z0Y0
      Related
      ENSMUSP00000109882, OTTMUSP00000027722, ENSMUST00000114244, OTTMUST00000057469
      Conserved Domains (1) summary
      cl17037
      Location:12259
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily
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