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    zgc:86709 zgc:86709 [ Danio rerio (zebrafish) ]

    Gene ID: 570210, updated on 26-Nov-2016
    Official Symbol
    zgc:86709provided by ZNC
    Official Full Name
    zgc:86709provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040625-35
    See related
    Ensembl:ENSDARG00000057911 Vega:OTTDARG00000016731
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Location:
    chromosome: 20
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    105 current GRCz10 (GCF_000002035.5) 20 NC_007131.6 (9983546..9992914, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 20 NC_007131.5 (10151617..10160985, complement)

    Chromosome 20 - NC_007131.6Genomic Context describing neighboring genes Neighboring gene syntaxin binding protein 6 (amisyn), like Neighboring gene gap junction protein delta 2b Neighboring gene transfer RNA leucine (anticodon CAA) Neighboring gene transfer RNA leucine (anticodon CAA)

    • Adrenergic signaling in cardiomyocytes, organism-specific biosystem (from KEGG)
      Adrenergic signaling in cardiomyocytes, organism-specific biosystemCardiac myocytes express at least six subtypes of adrenergic receptor (AR) which include three subtypes of beta-AR (beta-1, beta-2, beta-3) and three subtypes of the alpha-1-AR (alpha-1A, alpha-1B, a...
    • Adrenergic signaling in cardiomyocytes, conserved biosystem (from KEGG)
      Adrenergic signaling in cardiomyocytes, conserved biosystemCardiac myocytes express at least six subtypes of adrenergic receptor (AR) which include three subtypes of beta-AR (beta-1, beta-2, beta-3) and three subtypes of the alpha-1-AR (alpha-1A, alpha-1B, a...
    • Cardiac muscle contraction, organism-specific biosystem (from KEGG)
      Cardiac muscle contraction, organism-specific biosystemContraction of the heart is a complex process initiated by the electrical excitation of cardiac myocytes (excitation-contraction coupling, ECC). In cardiac myocytes, Ca2+ influx induced by activation...
    • Cardiac muscle contraction, conserved biosystem (from KEGG)
      Cardiac muscle contraction, conserved biosystemContraction of the heart is a complex process initiated by the electrical excitation of cardiac myocytes (excitation-contraction coupling, ECC). In cardiac myocytes, Ca2+ influx induced by activation...

    Markers

    Homology

    Clone Names

    • MGC86709, MGC174767

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    mesenchyme migration ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    positive regulation of gene expression ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    cell body ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    filopodium ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    lamellipodium ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Preferred Names
    cardiac muscle alpha actin 1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002066.1NP_001002066.1  cardiac muscle alpha actin 1

      See identical proteins and their annotated locations for NP_001002066.1

      Status: PROVISIONAL

      Source sequence(s)
      BC071386
      UniProtKB/TrEMBL
      Q6IQL9
      Related
      ENSDARP00000075110, OTTDARP00000017000, ENSDART00000080664, OTTDART00000020126
      Conserved Domains (2) summary
      PTZ00281
      Location:4377
      PTZ00281; actin; Provisional
      smart00268
      Location:7377
      ACTIN; Actin

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz10 Primary Assembly

    Genomic

    1. NC_007131.6 Reference GRCz10 Primary Assembly

      Range
      9983546..9992914 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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