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    Atoh1 atonal bHLH transcription factor 1 [ Mus musculus (house mouse) ]

    Gene ID: 11921, updated on 13-Sep-2016
    Official Symbol
    Atoh1provided by MGI
    Official Full Name
    atonal bHLH transcription factor 1provided by MGI
    Primary source
    MGI:MGI:104654
    See related
    Ensembl:ENSMUSG00000073043 Vega:OTTMUSG00000057064
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Hath1; Math1; MATH-1; bHLHa14
    Orthologs
    Location:
    6 C1; 6 30.03 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (64729146..64731243)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (64679140..64681237)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene glutamate receptor, ionotropic, delta 2 Neighboring gene transmembrane protein 258 pseudogene Neighboring gene predicted gene, 35851 Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 pseudogene Neighboring gene lurcher transcript 1

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    Notch signaling pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    auditory receptor cell differentiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    auditory receptor cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    auditory receptor cell fate determination IDA
    Inferred from Direct Assay
    more info
    PubMed 
    auditory receptor cell fate specification IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    axon guidance IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    brain development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cerebral cortex development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    inner ear development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    inner ear morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of apoptotic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    nervous system development IEA
    Inferred from Electronic Annotation
    more info
     
    neuron differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    neuron migration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of auditory receptor cell differentiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of inner ear receptor cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of neuron differentiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of transcription from RNA polymerase II promoter IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of transcription from RNA polymerase II promoter IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of neuron differentiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    protein atonal homolog 1
    Names
    atonal homolog 1
    helix-loop-helix protein mATH-1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_007500.4NP_031526.1  protein atonal homolog 1

      See identical proteins and their annotated locations for NP_031526.1

      Status: PROVISIONAL

      Source sequence(s)
      BC010820
      Consensus CDS
      CCDS20203.1
      UniProtKB/Swiss-Prot
      P48985
      Related
      ENSMUSP00000098903, OTTMUSP00000073605, ENSMUST00000101351, OTTMUST00000140551
      Conserved Domains (1) summary
      cd00083
      Location:155213
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      64729146..64731243
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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