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    Grhl2 grainyhead-like 2 (Drosophila) [ Mus musculus (house mouse) ]

    Gene ID: 252973, updated on 22-Apr-2017
    Official Symbol
    Grhl2provided by MGI
    Official Full Name
    grainyhead-like 2 (Drosophila)provided by MGI
    Primary source
    MGI:MGI:2182543
    See related
    Ensembl:ENSMUSG00000022286 Vega:OTTMUSG00000030880
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BOM; clft3; Tcfcp2l3; 0610015A08Rik
    Orthologs
    Location:
    15; 15 B3.1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (37232821..37363569)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (37162791..37293324)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene lactate dehydrogenase A pseudogene Neighboring gene uncharacterized LOC105245924 Neighboring gene predicted gene, 41303 Neighboring gene RIKEN cDNA 4930447A16 gene Neighboring gene neurocalcin delta Neighboring gene predicted gene 15941 Neighboring gene nucleus accumbens-associated protein 1 pseudogene

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    bicellular tight junction assembly ISO
    Inferred from Sequence Orthology
    more info
     
    brain development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    camera-type eye development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cardiac ventricle morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cell adhesion ISO
    Inferred from Sequence Orthology
    more info
     
    cell junction assembly ISO
    Inferred from Sequence Orthology
    more info
     
    cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    embryonic cranial skeleton morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryonic digit morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryonic organ development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    epidermis development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    epidermis development ISO
    Inferred from Sequence Orthology
    more info
     
    epithelial cell morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    epithelial cell morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    epithelial cell morphogenesis involved in placental branching IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    epithelium migration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    face development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    in utero embryonic development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    lung epithelial cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    lung lobe morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    multicellular organism growth IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of keratinocyte differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    neural tube closure IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    neural tube development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of telomerase activity ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of transcription from RNA polymerase II promoter IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of transcription from RNA polymerase II promoter ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of transcription, DNA-templated IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of DNA methylation ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of transcription, DNA-templated ISA
    Inferred from Sequence Alignment
    more info
    PubMed 
    respiratory tube development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cell-cell junction ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    grainyhead-like protein 2 homolog
    Names
    brother of mammalian grainyhead
    grainyhead like 2
    grainyheadlike
    transcription factor CP2-like 3

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026496.4NP_080772.2  grainyhead-like protein 2 homolog

      See identical proteins and their annotated locations for NP_080772.2

      Status: VALIDATED

      Source sequence(s)
      BC055035, BY018142, BY703140, CJ322576
      Consensus CDS
      CCDS27434.1
      UniProtKB/Swiss-Prot
      Q8K5C0
      Related
      ENSMUSP00000022895.8, OTTMUSP00000040224, ENSMUST00000022895.14, OTTMUST00000076417
      Conserved Domains (1) summary
      pfam04516
      Location:229438
      CP2; CP2 transcription factor

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

      Range
      37232821..37363569
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006520063.3XP_006520126.2  grainyhead-like protein 2 homolog isoform X1

    2. XM_017316621.1XP_017172110.1  grainyhead-like protein 2 homolog isoform X2

    3. XM_017316622.1XP_017172111.1  grainyhead-like protein 2 homolog isoform X3

    4. XM_017316623.1XP_017172112.1  grainyhead-like protein 2 homolog isoform X4

    5. XM_006520065.3XP_006520128.1  grainyhead-like protein 2 homolog isoform X5

      See identical proteins and their annotated locations for XP_006520128.1

      UniProtKB/TrEMBL
      Q9DCN4
      Related
      ENSMUSP00000125410.1, OTTMUSP00000040225, ENSMUST00000161405.7, OTTMUST00000076418
      Conserved Domains (1) summary
      pfam04516
      Location:229419
      CP2; CP2 transcription factor
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