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    Nrgn neurogranin [ Rattus norvegicus (Norway rat) ]

    Gene ID: 64356, updated on 22-Apr-2017
    Official Symbol
    Nrgnprovided by RGD
    Official Full Name
    neurograninprovided by RGD
    Primary source
    RGD:61833
    See related
    Ensembl:ENSRNOG00000010688
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RC3; BICKS
    Summary
    neuron specific protein kinase C substrate [RGD, Feb 2006]
    Orthologs
    Location:
    8q21
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (40015049..40023193, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 8 NC_005107.3 (40015873..40024017, complement)

    Chromosome 8 - NC_005107.4Genomic Context describing neighboring genes Neighboring gene endothelial cell adhesion molecule Neighboring gene V-set and immunoglobulin domain containing 2 Neighboring gene uncharacterized LOC103693043 Neighboring gene uncharacterized LOC108351844

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    calmodulin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    calmodulin binding ISO
    Inferred from Sequence Orthology
    more info
     
    phosphatidic acid binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    phosphatidylinositol-3,4,5-trisphosphate binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    associative learning IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    positive regulation of long-term synaptic potentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    telencephalon development IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    Component Evidence Code Pubs
    axon IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    dendrite IDA
    Inferred from Direct Assay
    more info
    PubMed 
    dendritic spine head IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mitochondrial membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    neuronal cell body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    postsynaptic density IDA
    Inferred from Direct Assay
    more info
    PubMed 
    synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    trans-Golgi network transport vesicle membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    neurogranin
    Names
    neurogranin (protein kinase C substrate, RC3)
    ng
    protein kinase C substrate 7.5 kDa protein

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_024140.2NP_077054.1  neurogranin

      See identical proteins and their annotated locations for NP_077054.1

      Status: PROVISIONAL

      Source sequence(s)
      L09119
      UniProtKB/Swiss-Prot
      Q04940
      Related
      ENSRNOP00000014404.2, ENSRNOT00000014404.3
      Conserved Domains (1) summary
      smart00015
      Location:3247
      IQ; Calmodulin-binding motif

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005107.4 Reference Rnor_6.0 Primary Assembly

      Range
      40015049..40023193 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000076.1 Alternate Rn_Celera

      Range
      37191658..37199870
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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