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    Gabpa GA repeat binding protein, alpha [ Mus musculus (house mouse) ]

    Gene ID: 14390, updated on 8-Oct-2017
    Official Symbol
    Gabpaprovided by MGI
    Official Full Name
    GA repeat binding protein, alphaprovided by MGI
    Primary source
    MGI:MGI:95610
    See related
    Ensembl:ENSMUSG00000008976 Vega:OTTMUSG00000025176
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    GABPalpha
    Orthologs
    Location:
    16 C3.3; 16 46.92 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 16 NC_000082.6 (84834925..84863783)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (84835369..84864024)

    Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 32202 Neighboring gene junction adhesion molecule 2 Neighboring gene predicted gene, 46557 Neighboring gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F Neighboring gene predicted gene 10791 Neighboring gene amyloid beta (A4) precursor protein Neighboring gene predicted gene, 41482

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    nuclear chromatin ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Preferred Names
    GA-binding protein alpha chain
    Names
    GA-binding protein alpha-subunit
    GABP subunit alpha

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008065.2NP_032091.2  GA-binding protein alpha chain

      See identical proteins and their annotated locations for NP_032091.2

      Status: PROVISIONAL

      Source sequence(s)
      BC052448
      Consensus CDS
      CCDS28284.1
      UniProtKB/Swiss-Prot
      Q00422
      Related
      ENSMUSP00000009120.7, OTTMUSP00000030491, ENSMUST00000009120.7, OTTMUST00000061964
      Conserved Domains (3) summary
      cd08534
      Location:168254
      SAM_PNT-GABP-alpha; Sterile alpha motif (SAM)/Pointed domain of GA-binding protein (GABP) alpha chain
      smart00413
      Location:319403
      ETS; erythroblast transformation specific domain
      pfam11620
      Location:40119
      GABP-alpha; GA-binding protein alpha chain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000082.6 Reference GRCm38.p4 C57BL/6J

      Range
      84834925..84863783
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006522906.2XP_006522969.1  GA-binding protein alpha chain isoform X1

      See identical proteins and their annotated locations for XP_006522969.1

      Conserved Domains (3) summary
      cd08534
      Location:168254
      SAM_PNT-GABP-alpha; Sterile alpha motif (SAM)/Pointed domain of GA-binding protein (GABP) alpha chain
      smart00413
      Location:321405
      ETS; erythroblast transformation specific domain
      pfam11620
      Location:40119
      GABP-alpha; GA-binding protein alpha chain
    2. XM_006522907.2XP_006522970.1  GA-binding protein alpha chain isoform X2

      See identical proteins and their annotated locations for XP_006522970.1

      UniProtKB/Swiss-Prot
      Q00422
      Related
      ENSMUSP00000109822.1, OTTMUSP00000030492, ENSMUST00000114184.7, OTTMUST00000061965
      Conserved Domains (3) summary
      cd08534
      Location:168254
      SAM_PNT-GABP-alpha; Sterile alpha motif (SAM)/Pointed domain of GA-binding protein (GABP) alpha chain
      smart00413
      Location:319403
      ETS; erythroblast transformation specific domain
      pfam11620
      Location:40119
      GABP-alpha; GA-binding protein alpha chain
    3. XM_006522905.3XP_006522968.1  GA-binding protein alpha chain isoform X1

      See identical proteins and their annotated locations for XP_006522968.1

      Conserved Domains (3) summary
      cd08534
      Location:168254
      SAM_PNT-GABP-alpha; Sterile alpha motif (SAM)/Pointed domain of GA-binding protein (GABP) alpha chain
      smart00413
      Location:321405
      ETS; erythroblast transformation specific domain
      pfam11620
      Location:40119
      GABP-alpha; GA-binding protein alpha chain
    4. XM_017316875.1XP_017172364.1  GA-binding protein alpha chain isoform X3

    5. XM_017316876.1XP_017172365.1  GA-binding protein alpha chain isoform X4

    RNA

    1. XR_876129.2 RNA Sequence

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