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    Nptx2 neuronal pentraxin 2 [ Mus musculus (house mouse) ]

    Gene ID: 53324, updated on 25-May-2017
    Official Symbol
    Nptx2provided by MGI
    Official Full Name
    neuronal pentraxin 2provided by MGI
    Primary source
    MGI:MGI:1858209
    See related
    Ensembl:ENSMUSG00000059991 Vega:OTTMUSG00000054975
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    np2; Narp
    Orthologs
    Location:
    5 G2; 5 84.58 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (144545887..144557478)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (145306756..145318347)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 33714 Neighboring gene predicted gene, 33765 Neighboring gene 40S ribosomal protein S29 pseudogene Neighboring gene transmembrane protein 130

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    associative learning IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    neuronal pentraxin-2
    Names
    NP-II
    neuro activity regulated petaxin
    neuronal pentraxin II

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_016789.3NP_058069.1  neuronal pentraxin-2 precursor

      See identical proteins and their annotated locations for NP_058069.1

      Status: VALIDATED

      Source sequence(s)
      AC164119, AK134806, DV649643
      Consensus CDS
      CCDS19849.1
      UniProtKB/Swiss-Prot
      O70340
      UniProtKB/TrEMBL
      Q3UYB9
      Related
      ENSMUSP00000071687.6, OTTMUSP00000071957, ENSMUST00000071782.7, OTTMUST00000136233
      Conserved Domains (2) summary
      smart00159
      Location:217422
      PTX; Pentraxin / C-reactive protein / pentaxin family
      cl03951
      Location:66185
      CDC37_N; Cdc37 N terminal kinase binding

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      144545887..144557478
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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