Format

Send to:

Choose Destination

Links from PubMed

    • Showing Current items.

    Figla folliculogenesis specific basic helix-loop-helix [ Mus musculus (house mouse) ]

    Gene ID: 26910, updated on 20-Aug-2016
    Official Symbol
    Figlaprovided by MGI
    Official Full Name
    folliculogenesis specific basic helix-loop-helixprovided by MGI
    Primary source
    MGI:MGI:1349421
    See related
    Ensembl:ENSMUSG00000030001 Vega:OTTMUSG00000056193
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    bHLHc8; FIGalpha
    Orthologs
    Location:
    6; 6 C3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (86016494..86020996)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (85967185..85970990)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 33319 Neighboring gene RIKEN cDNA 4930553P18 gene Neighboring gene adducin 2 (beta) Neighboring gene protein aurora borealis-like

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    RNA polymerase II core promoter proximal region sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
     
    contributes_to sequence-specific DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    contributes_to sequence-specific DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    transcription factor binding ISO
    Inferred from Sequence Orthology
    more info
     
    transcription factor binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    oogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of transcription from RNA polymerase II promoter IDA
    Inferred from Direct Assay
    more info
    PubMed 
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    transcription factor complex ISO
    Inferred from Sequence Orthology
    more info
     
    transcription factor complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Preferred Names
    factor in the germline alpha
    Names
    FIG alpha
    transcription factor FIGa

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_012013.2NP_036143.1  factor in the germline alpha

      See identical proteins and their annotated locations for NP_036143.1

      Status: VALIDATED

      Source sequence(s)
      AC158679, DV657415
      Consensus CDS
      CCDS20307.1
      UniProtKB/Swiss-Prot
      O55208
      UniProtKB/TrEMBL
      H6UWL1
      Related
      ENSMUSP00000032070, OTTMUSP00000072970, ENSMUST00000032070, OTTMUST00000138922
      Conserved Domains (1) summary
      cd00083
      Location:59116
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      86016494..86020996
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017321595.1XP_017177084.1  

    Support Center