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    Rin1 Ras and Rab interactor 1 [ Mus musculus (house mouse) ]

    Gene ID: 225870, updated on 3-Sep-2017
    Official Symbol
    Rin1provided by MGI
    Official Full Name
    Ras and Rab interactor 1provided by MGI
    Primary source
    MGI:MGI:2385695
    See related
    Ensembl:ENSMUSG00000024883
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Orthologs
    Location:
    19; 19 A
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (5050019..5057072)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (5050808..5057071)

    Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene beta-1,4-glucuronyltransferase 1 Neighboring gene breast cancer metastasis-suppressor 1 Neighboring gene CD248 antigen, endosialin Neighboring gene predicted gene, 30627

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
     
    Ras GTPase binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    associative learning IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    endocytosis IEA
    Inferred from Electronic Annotation
    more info
     
    memory IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of synaptic plasticity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    dendrite IDA
    Inferred from Direct Assay
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    neuronal cell body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Preferred Names
    ras and Rab interactor 1
    Names
    ras interaction/interference protein 1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145495.2NP_663470.1  ras and Rab interactor 1

      See identical proteins and their annotated locations for NP_663470.1

      Status: PROVISIONAL

      Source sequence(s)
      AC124502
      Consensus CDS
      CCDS29447.1
      UniProtKB/Swiss-Prot
      Q921Q7
      Related
      ENSMUSP00000153189.1, ENSMUST00000225427.1
      Conserved Domains (3) summary
      smart00167
      Location:478596
      VPS9; Domain present in VPS9
      cd10393
      Location:57157
      SH2_RIN1; Src homology 2 (SH2) domain found in Ras and Rab interactor 1 (RIN1)-like proteins
      cl00155
      Location:616693
      UBQ; Ubiquitin-like proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

      Range
      5050019..5057072
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006531709.2XP_006531772.1  ras and Rab interactor 1 isoform X1

      See identical proteins and their annotated locations for XP_006531772.1

      Related
      ENSMUSP00000025818.7, ENSMUST00000025818.7
      Conserved Domains (3) summary
      smart00167
      Location:513631
      VPS9; Domain present in VPS9
      cd10393
      Location:81177
      SH2_RIN1; Src homology 2 (SH2) domain found in Ras and Rab interactor 1 (RIN1)-like proteins
      cl00155
      Location:651728
      UBQ; Ubiquitin-like proteins
    2. XM_006531711.2XP_006531774.1  ras and Rab interactor 1 isoform X2

      Conserved Domains (3) summary
      smart00167
      Location:409527
      VPS9; Domain present in VPS9
      cl00155
      Location:547624
      UBQ; Ubiquitin-like proteins
      cl15255
      Location:4673
      SH2; Src homology 2 (SH2) domain
    3. XM_006531712.2XP_006531775.1  ras and Rab interactor 1 isoform X3

      Conserved Domains (3) summary
      smart00167
      Location:398516
      VPS9; Domain present in VPS9
      cl00155
      Location:536613
      UBQ; Ubiquitin-like proteins
      cl15255
      Location:4677
      SH2; Src homology 2 (SH2) domain
    4. XM_006531710.2XP_006531773.1  ras and Rab interactor 1 isoform X1

      See identical proteins and their annotated locations for XP_006531773.1

      Conserved Domains (3) summary
      smart00167
      Location:513631
      VPS9; Domain present in VPS9
      cd10393
      Location:81177
      SH2_RIN1; Src homology 2 (SH2) domain found in Ras and Rab interactor 1 (RIN1)-like proteins
      cl00155
      Location:651728
      UBQ; Ubiquitin-like proteins
    5. XM_006531713.1XP_006531776.1  ras and Rab interactor 1 isoform X4

      See identical proteins and their annotated locations for XP_006531776.1

      Conserved Domains (3) summary
      smart00167
      Location:354472
      VPS9; Domain present in VPS9
      cl00155
      Location:492569
      UBQ; Ubiquitin-like proteins
      cl15255
      Location:118
      SH2; Src homology 2 (SH2) domain
    6. XM_006531719.1XP_006531782.1  ras and Rab interactor 1 isoform X5

      Conserved Domains (3) summary
      smart00167
      Location:343461
      VPS9; Domain present in VPS9
      cl00155
      Location:481558
      UBQ; Ubiquitin-like proteins
      cl15255
      Location:122
      SH2; Src homology 2 (SH2) domain
    7. XM_006531717.1XP_006531780.1  ras and Rab interactor 1 isoform X4

      See identical proteins and their annotated locations for XP_006531780.1

      Conserved Domains (3) summary
      smart00167
      Location:354472
      VPS9; Domain present in VPS9
      cl00155
      Location:492569
      UBQ; Ubiquitin-like proteins
      cl15255
      Location:118
      SH2; Src homology 2 (SH2) domain
    8. XM_006531716.1XP_006531779.1  ras and Rab interactor 1 isoform X4

      See identical proteins and their annotated locations for XP_006531779.1

      Conserved Domains (3) summary
      smart00167
      Location:354472
      VPS9; Domain present in VPS9
      cl00155
      Location:492569
      UBQ; Ubiquitin-like proteins
      cl15255
      Location:118
      SH2; Src homology 2 (SH2) domain
    9. XM_006531715.1XP_006531778.1  ras and Rab interactor 1 isoform X4

      See identical proteins and their annotated locations for XP_006531778.1

      Conserved Domains (3) summary
      smart00167
      Location:354472
      VPS9; Domain present in VPS9
      cl00155
      Location:492569
      UBQ; Ubiquitin-like proteins
      cl15255
      Location:118
      SH2; Src homology 2 (SH2) domain
    10. XM_006531718.1XP_006531781.1  ras and Rab interactor 1 isoform X4

      See identical proteins and their annotated locations for XP_006531781.1

      Conserved Domains (3) summary
      smart00167
      Location:354472
      VPS9; Domain present in VPS9
      cl00155
      Location:492569
      UBQ; Ubiquitin-like proteins
      cl15255
      Location:118
      SH2; Src homology 2 (SH2) domain
    11. XM_006531714.1XP_006531777.1  ras and Rab interactor 1 isoform X4

      See identical proteins and their annotated locations for XP_006531777.1

      Conserved Domains (3) summary
      smart00167
      Location:354472
      VPS9; Domain present in VPS9
      cl00155
      Location:492569
      UBQ; Ubiquitin-like proteins
      cl15255
      Location:118
      SH2; Src homology 2 (SH2) domain
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