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    Sobp sine oculis-binding protein homolog (Drosophila) [ Mus musculus (house mouse) ]

    Gene ID: 109205, updated on 12-Mar-2017
    Official Symbol
    Sobpprovided by MGI
    Official Full Name
    sine oculis-binding protein homolog (Drosophila)provided by MGI
    Primary source
    MGI:MGI:1924427
    See related
    Ensembl:ENSMUSG00000038248 Vega:OTTMUSG00000046585
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    jc; JXC1; 2900009C16Rik; 5330439J01Rik
    Orthologs
    Location:
    10 B2; 10 22.89 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (43002488..43174905, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (42722306..42894336, complement)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 34006 Neighboring gene sex comb on midleg-like 4 (Drosophila) Neighboring gene predicted gene 5079 Neighboring gene RIKEN cDNA 9030612E09 gene Neighboring gene prenyl (solanesyl) diphosphate synthase, subunit 2 Neighboring gene predicted gene, 40631 Neighboring gene ribosomal protein S19, pseudogene 11

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Associated conditions

    Description Tests
    Jackson circler
    GeneReviews: Not available
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Clone Names

    • MGC67344

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    SUMO polymer binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cochlea development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cognition ISO
    Inferred from Sequence Orthology
    more info
     
    inner ear morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    locomotory behavior IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    sensory perception of sound IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    sine oculis-binding protein homolog
    Names
    jackson circler protein 1
    sobp

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175407.3NP_780616.4  sine oculis-binding protein homolog

      See identical proteins and their annotated locations for NP_780616.4

      Status: VALIDATED

      Source sequence(s)
      AC112265, BC059851, BY712464
      Consensus CDS
      CCDS35890.1
      UniProtKB/Swiss-Prot
      Q0P5V2
      Related
      ENSMUSP00000040072, OTTMUSP00000066852, ENSMUST00000040275, OTTMUST00000121122
      Conserved Domains (2) summary
      TIGR04213
      Location:59114
      PGF_pre_PGF; PGF-pre-PGF domain
      pfam15279
      Location:224524
      SOBP; Sine oculis-binding protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

      Range
      43002488..43174905 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017313763.1XP_017169252.1  sine oculis-binding protein homolog isoform X1

      Conserved Domains (2) summary
      TIGR04213
      Location:59114
      PGF_pre_PGF; PGF-pre-PGF domain
      pfam15279
      Location:192492
      SOBP; Sine oculis-binding protein
    2. XM_017313764.1XP_017169253.1  sine oculis-binding protein homolog isoform X2

      Conserved Domains (1) summary
      pfam15279
      Location:1265
      SOBP; Sine oculis-binding protein
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