Format

Send to:

Choose Destination

Links from PubMed

    • Showing Current items.

    PFA-DSP1 Phosphotyrosine protein phosphatases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839348, updated on 5-Nov-2017
    Gene symbol
    PFA-DSP1
    Gene description
    Phosphotyrosine protein phosphatases superfamily protein
    Primary source
    Araport:AT1G05000
    Locus tag
    AT1G05000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtPFA-DSP1; plant and fungi atypical dual-specificity phosphatase 1; T7A14.14; T7A14_14
    Summary
    Encodes an atypical dual-specificity phosphatase.
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (1425539..1428869)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene PDI-like 2-2 Neighboring gene triacylglycerol lipase-like protein Neighboring gene Zinc finger C-x8-C-x5-C-x3-H type family protein Neighboring gene PPR containing protein Neighboring gene ncRNA Neighboring gene ethylene-forming enzyme

    Products Interactant Other Gene Complex Source Pubs Description

    Homology

    NM_001160832.2
    NM_100379.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    phosphatase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    phosphoprotein phosphatase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein tyrosine phosphatase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    dephosphorylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    cytoplasm ISM
    Inferred from Sequence Model
    more info
     
    Names
    Phosphotyrosine protein phosphatases superfamily protein
    NP_001154304.1
    • Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic (InterPro:IPR020428), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT2G32960.1); Has 580 Blast hits to 572 proteins in 119 species: Archae - 0; Bacteria - 14; Metazoa - 1; Fungi - 314; Plants - 145; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).
    NP_171993.1
    • Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic (InterPro:IPR020428), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT2G32960.1); Has 669 Blast hits to 655 proteins in 149 species: Archae - 0; Bacteria - 50; Metazoa - 4; Fungi - 355; Plants - 145; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1425539..1428869
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331513.1NP_001322400.1  Phosphotyrosine protein phosphatases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ATV0
    2. NM_001160832.2NP_001154304.1  Phosphotyrosine protein phosphatases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154304.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I780
      Conserved Domains (1) summary
      pfam03162
      Location:53234
      Y_phosphatase2; Tyrosine phosphatase family
    3. NM_100379.3NP_171993.1  Phosphotyrosine protein phosphatases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171993.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZVN4
      UniProtKB/TrEMBL
      Q0WS70
      Conserved Domains (1) summary
      pfam03162
      Location:53202
      Y_phosphatase2; Tyrosine phosphatase family
    Support Center