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    Nsg1 neuronal vesicle trafficking associated 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 25247, updated on 5-Nov-2017
    Official Symbol
    Nsg1provided by RGD
    Official Full Name
    neuronal vesicle trafficking associated 1provided by RGD
    Primary source
    RGD:2222
    See related
    Ensembl:ENSRNOG00000005700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    PEP1; Bsmrb; Neep21
    Summary
    (brain-specific protein that) may be involved in neuronal fiber networks [RGD, Feb 2006]
    Orthologs
    Location:
    14q21
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (77380264..77402007)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 14 NC_005113.3 (77362126..77383869)

    Chromosome 14 - NC_005113.4Genomic Context describing neighboring genes Neighboring gene Ly1 antibody reactive Neighboring gene zinc finger and BTB domain containing 49 Neighboring gene syntaxin 18 Neighboring gene uncharacterized LOC108352772

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    clathrin light chain binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    amyloid precursor protein metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    apoptotic process IEA
    Inferred from Electronic Annotation
    more info
     
    apoptotic process ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    clathrin coat assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    dopamine receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    endosomal transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    neurotransmitter receptor transport, endosome to postsynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
     
    neurotransmitter receptor transport, endosome to postsynaptic membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    positive regulation of receptor recycling IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cell ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    dendrite IDA
    Inferred from Direct Assay
    more info
    PubMed 
    early endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    endosome ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    integral component of membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    intracellular ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    late endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    lateral plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    lateral plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    postsynaptic endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    postsynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
     
    postsynaptic membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    trans-Golgi network membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    neuron-specific protein family member 1
    Names
    brain neuron cytoplasmic protein 1/2
    brain specific mRNA b
    neuron specific gene family member 1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_024128.3NP_077042.2  neuron-specific protein family member 1

      See identical proteins and their annotated locations for NP_077042.2

      Status: VALIDATED

      Source sequence(s)
      BC060538
      UniProtKB/Swiss-Prot
      P02683
      Related
      ENSRNOP00000008030.5, ENSRNOT00000008030.7
      Conserved Domains (1) summary
      pfam06387
      Location:1180
      Calcyon; D1 dopamine receptor-interacting protein (calcyon)

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005113.4 Reference Rnor_6.0 Primary Assembly

      Range
      77380264..77402007
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000082.1 Alternate Rn_Celera

      Range
      71598968..71620711
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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