Format

Send to:

Choose Destination

Links from PubMed

    • Showing Current items.

    rppH RNA pyrophosphohydrolase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947300, updated on 22-May-2018
    Gene symbol
    rppH
    Gene description
    RNA pyrophosphohydrolase
    Primary source
    EcoGene:EG13091
    Locus tag
    b2830
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2826; JW2798; nudH; ygdP
    Summary
    Nudix hydrolase. [More information is available at EcoGene: EG13091]. Mutations disrupting YgdP suppress the temperature-sensitivity of degP null mutants and mirror the effects of mutation in PrlF . [More information is available at EcoCyc: G7459].
    Sequence:
    NC_000913.3 (2968447..2968977, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene phosphatidylglycerol-prolipoprotein diacylglyceryl transferase Neighboring gene PEP-protein phosphotransferase enzyme I; GAF domain containing protein Neighboring gene methyl-directed mismatch repair protein Neighboring gene UPF0053 family inner membrane protein

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    • RNA degradation, organism-specific biosystem (from KEGG)
      RNA degradation, organism-specific biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...
    • RNA degradation, conserved biosystem (from KEGG)
      RNA degradation, conserved biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    RNA pyrophosphohydrolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    RNA pyrophosphohydrolase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IDA
    Inferred from Direct Assay
    more info
    PubMed 
    magnesium ion binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    RNA destabilization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    mRNA catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mRNA catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Names
    RNA pyrophosphohydrolase
    NP_417307.1
    • putative invasion protein

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2968447..2968977 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417307.1 RNA pyrophosphohydrolase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417307.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P0A776
      Conserved Domains (1) summary
      PRK00714
      Location:1156
      PRK00714; RNA pyrophosphohydrolase; Reviewed
    Support Center