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    Rdh10 retinol dehydrogenase 10 (all-trans) [ Mus musculus (house mouse) ]

    Gene ID: 98711, updated on 25-Sep-2017
    Official Symbol
    Rdh10provided by MGI
    Official Full Name
    retinol dehydrogenase 10 (all-trans)provided by MGI
    Primary source
    MGI:MGI:1924238
    See related
    Ensembl:ENSMUSG00000025921 Vega:OTTMUSG00000025248
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    m366Asp; AI875664; AW549993; D1Ertd762e; 3110069K09Rik; 4921506A21Rik
    Expression
    Ubiquitous expression in limb E14.5 (RPKM 15.9), duodenum adult (RPKM 10.2) and 28 other tissues See more
    Orthologs
    Location:
    1 A3; 1 4.94 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (16105882..16132550)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (16095963..16122631)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930444P10 gene Neighboring gene ribosomal protein L7 Neighboring gene uncharacterized LOC102634042 Neighboring gene staufen double-stranded RNA binding protein 2 Neighboring gene ubiquitin-conjugating enzyme E2W (putative) Neighboring gene predicted gene, 46084

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    NADP-retinol dehydrogenase activity ISO
    Inferred from Sequence Orthology
    more info
     
    oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
     
    retinol dehydrogenase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    retinol dehydrogenase activity ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Process Evidence Code Pubs
    animal organ morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    bud elongation involved in lung branching IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    ear development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryonic camera-type eye development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryonic forelimb morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryonic organ development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryonic viscerocranium morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    gonad development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    in utero embryonic development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    metanephros development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    neural crest cell development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    nose development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    oxidation-reduction process IEA
    Inferred from Electronic Annotation
    more info
     
    primary lung bud formation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    retinal metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    retinoic acid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    retinol metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    visual perception ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    cell body ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    retinol dehydrogenase 10
    NP_598593.1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133832.3NP_598593.1  retinol dehydrogenase 10

      See identical proteins and their annotated locations for NP_598593.1

      Status: PROVISIONAL

      Source sequence(s)
      AC162442
      Consensus CDS
      CCDS14830.1
      UniProtKB/Swiss-Prot
      Q8VCH7
      Related
      ENSMUSP00000027053.7, OTTMUSP00000030597, ENSMUST00000027053.7, OTTMUST00000062152
      Conserved Domains (2) summary
      cd05339
      Location:38307
      17beta-HSDXI-like_SDR_c; human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs
      pfam00106
      Location:37252
      adh_short; short chain dehydrogenase

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      16105882..16132550
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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