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    Nr2e3 nuclear receptor subfamily 2, group E, member 3 [ Mus musculus (house mouse) ]

    Gene ID: 23958, updated on 22-Apr-2017
    Official Symbol
    Nr2e3provided by MGI
    Official Full Name
    nuclear receptor subfamily 2, group E, member 3provided by MGI
    Primary source
    MGI:MGI:1346317
    See related
    Ensembl:ENSMUSG00000032292 Vega:OTTMUSG00000023008
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    PNR; RNR; rd7; A930035N01Rik
    Orthologs
    Location:
    9 B; 9 32.35 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (59942771..59960834, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (59790578..59797886, complement)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene myosin IXa Neighboring gene predicted gene 7613 Neighboring gene 60S ribosomal protein L37 pseudogene Neighboring gene predicted gene, 20275 Neighboring gene predicted gene 7616 Neighboring gene thrombospondin, type I, domain containing 4 Neighboring gene RIKEN cDNA 9230112J17 gene Neighboring gene predicted gene, 33406

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    Products Interactant Other Gene Complex Source Pubs Description

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    RNA polymerase II core promoter proximal region sequence-specific DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    sequence-specific DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    steroid hormone receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    transcription factor activity, sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transcription factor complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    photoreceptor-specific nuclear receptor
    Names
    retina-specific nuclear receptor
    retinal degeneration 7

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013708.4NP_038736.1  photoreceptor-specific nuclear receptor

      See identical proteins and their annotated locations for NP_038736.1

      Status: PROVISIONAL

      Source sequence(s)
      AC131749
      Consensus CDS
      CCDS23255.1
      UniProtKB/Swiss-Prot
      Q9QXZ7
      UniProtKB/TrEMBL
      Q543C7
      Related
      ENSMUSP00000034831.2, OTTMUSP00000026535, ENSMUST00000034831.2, OTTMUST00000055414
      Conserved Domains (2) summary
      cd06950
      Location:185382
      NR_LBD_Tlx_PNR_like; The ligand binding domain of Tailless-like proteins, orphan nuclear receptors
      cd06970
      Location:32123
      NR_DBD_PNR; DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) is composed of two C4-type zinc fingers

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      59942771..59960834 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011242742.1XP_011241044.1  photoreceptor-specific nuclear receptor isoform X1

      See identical proteins and their annotated locations for XP_011241044.1

      Conserved Domains (2) summary
      cd06950
      Location:113310
      NR_LBD_Tlx_PNR_like; The ligand binding domain of Tailless-like proteins, orphan nuclear receptors
      cl02596
      Location:351
      NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
    2. XM_006511149.3XP_006511212.1  photoreceptor-specific nuclear receptor isoform X1

      See identical proteins and their annotated locations for XP_006511212.1

      Conserved Domains (2) summary
      cd06950
      Location:113310
      NR_LBD_Tlx_PNR_like; The ligand binding domain of Tailless-like proteins, orphan nuclear receptors
      cl02596
      Location:351
      NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
    3. XM_006511150.3XP_006511213.1  photoreceptor-specific nuclear receptor isoform X2

      Conserved Domains (2) summary
      cd06950
      Location:104301
      NR_LBD_Tlx_PNR_like; The ligand binding domain of Tailless-like proteins, orphan nuclear receptors
      cl02596
      Location:142
      NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
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