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    PLDP2 phospholipase D P2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819730, updated on 4-Apr-2017
    Gene symbol
    PLDP2
    Gene description
    phospholipase D P2
    Primary source
    Araport:AT3G05630
    Locus tag
    AT3G05630
    Gene type
    protein coding
    RNA name
    phospholipase D P2
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18C1.10; F18C1_10; PDLZ2; PHOSPHOLIPASE D; phospholipase D P2; PHOSPHOLIPASE D ZETA 2; PLDZETA2
    Summary
    Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning. Expression is upregulated in the shoot of cax1/cax3 mutant.
    See PLDP2 in Map Viewer
    Location:
    chromosome: 3
    Exon count:
    16
    Sequence:
    Chromosome: 3; NC_003074.8 (1635194..1640357)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene receptor like protein 32

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Homology

    NM_111436.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    N-acylphosphatidylethanolamine-specific phospholipase D activity IEA
    Inferred from Electronic Annotation
    more info
     
    phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
     
    phospholipase D activity IEA
    Inferred from Electronic Annotation
    more info
     
    phospholipase D activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    cellular response to nitrogen starvation IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    cellular response to phosphate starvation IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    galactolipid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    phospholipid catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of vesicle-mediated transport IDA
    Inferred from Direct Assay
    more info
    PubMed 
    response to auxin IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    root development IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleus ISM
    Inferred from Sequence Model
    more info
     
    vacuole IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Names
    phospholipase D P2
    NP_187214.2
    • phospholipase D P2 (PLDP2); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: in 7 processes; LOCATED IN: vacuole; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Phospholipase D, eukaryota (InterPro:IPR016555), Phospholipase D (InterPro:IPR015679), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: phospholipase D P1 (TAIR:AT3G16785.1); Has 2813 Blast hits to 1615 proteins in 467 species: Archae - 4; Bacteria - 808; Metazoa - 511; Fungi - 591; Plants - 736; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1635194..1640357
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111436.6NP_187214.2  phospholipase D P2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187214.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M9W8
      Conserved Domains (5) summary
      cd06895
      Location:42205
      PX_PLD; The phosphoinositide binding Phox Homology domain of Phospholipase D
      cd09138
      Location:365510
      PLDc_vPLD1_2_yPLD_like_1; Catalytic domain, repeat 1, of vertebrate phospholipases, PLD1 and PLD2, yeast PLDs, and similar proteins
      cd09141
      Location:707891
      PLDc_vPLD1_2_yPLD_like_2; Catalytic domain, repeat 2, of vertebrate phospholipases, PLD1 and PLD2, yeast PLDs, and similar proteins
      PLN02866
      Location:391046
      PLN02866; phospholipase D
      cd01254
      Location:193341
      PH_PLD; Phospholipase D pleckstrin homology (PH) domain
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