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    sema3d sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D [ Danio rerio (zebrafish) ]

    Gene ID: 30250, updated on 4-Aug-2017
    Official Symbol
    sema3dprovided by ZNC
    Official Full Name
    sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Dprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-990715-2
    See related
    Ensembl:ENSDARG00000017369 Vega:OTTDARG00000032427
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    sema2; semaZ2
    Orthologs
    Location:
    chromosome: 18
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (9171778..9238675)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (9213759..9280656)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC565175 Neighboring gene transmembrane protein 243, mitochondrial a Neighboring gene glutamate receptor, metabotropic 3 Neighboring gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab Neighboring gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    axon guidance IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    axonal fasciculation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    blood vessel endothelial cell migration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cardioblast differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cartilage development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    cell proliferation in hindbrain IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryonic heart tube development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryonic skeletal joint morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enteric nervous system development IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    enteric nervous system development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    fin regeneration IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    fin regeneration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    larval heart development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    nervous system development IEA
    Inferred from Electronic Annotation
    more info
     
    neural crest cell development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    neural crest cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    neural crest cell migration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    peripheral nervous system development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    peripheral nervous system neuron axonogenesis IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    peripheral nervous system neuron axonogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of axon extension IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of cell cycle IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    retinal ganglion cell axon guidance IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    thymus development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    semaphorin-3D
    Names
    sema Z2
    semaphorin 3d
    semaphorin-2
    semaphorin-Z2

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_131048.2NP_571123.2  semaphorin-3D precursor

      Status: VALIDATED

      Source sequence(s)
      CU633862, CU855784, CU861648
      UniProtKB/TrEMBL
      E9QD84
      Related
      ENSDARP00000091966.5, OTTDARP00000035798, ENSDART00000101192.6, OTTDART00000045301
      Conserved Domains (3) summary
      cd05871
      Location:599689
      Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
      cd11252
      Location:65538
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:537589
      PSI; domain found in Plexins, Semaphorins and Integrins

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      9171778..9238675
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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