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    plxnd1 plexin D1 [ Danio rerio (zebrafish) ]

    Gene ID: 402998, updated on 4-Jun-2017
    Official Symbol
    plxnd1provided by ZNC
    Official Full Name
    plexin D1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1828
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    zgc:77379
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    Location:
    chromosome: 8
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    105 current GRCz10 (GCF_000002035.5) 8 NC_007119.6 (54172020..54189794)
    103 previous assembly Zv9 (GCF_000002035.4) 8 NC_007119.5 (56155957..56171313)
    103 previous assembly Zv9 (GCF_000002035.4) Unplaced Scaffold NW_003336794.1 (1..1346, complement)

    Chromosome 8 - NC_007119.6Genomic Context describing neighboring genes Neighboring gene thyrotropin-releasing hormone Neighboring gene transmembrane and coiled-coil domain family 1a Neighboring gene extra-ocular rhodopsin

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Clone Names

    • MGC77379

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    semaphorin receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    angioblast cell migration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    branching involved in blood vessel morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryonic eye morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    morphogenesis of a branching structure IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    sprouting angiogenesis IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    sprouting angiogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane NAS
    Non-traceable Author Statement
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    plexin-D1
    Names
    obd
    out of bounds

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_205697.2NP_991260.2  plexin-D1 precursor

      See identical proteins and their annotated locations for NP_991260.2

      Status: PROVISIONAL

      Source sequence(s)
      AY648302
      UniProtKB/TrEMBL
      Q6DSU3
      Conserved Domains (4) summary
      cd11247
      Location:33507
      Sema_plexin_D1; The Sema domain, a protein interacting module, of Plexin D1
      pfam01437
      Location:508561
      PSI; Plexin repeat
      pfam08337
      Location:13001843
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain
      cl15674
      Location:848937
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz10 Primary Assembly

    Genomic

    1. NC_007119.6 Reference GRCz10 Primary Assembly

      Range
      54172020..54189794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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