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    Sgcz sarcoglycan zeta [ Mus musculus (house mouse) ]

    Gene ID: 244431, updated on 4-Jun-2017
    Official Symbol
    Sgczprovided by MGI
    Official Full Name
    sarcoglycan zetaprovided by MGI
    Primary source
    MGI:MGI:2388820
    See related
    Ensembl:ENSMUSG00000039539 Vega:OTTMUSG00000031650
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C230085N17Rik
    Orthologs
    Location:
    8; 8 A4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 8 NC_000074.6 (37517840..38662638, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (38585608..39724562, complement)

    Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene predicted gene 7319 Neighboring gene tubulin, alpha 1C pseudogene Neighboring gene forkhead box N2 pseudogene Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene Neighboring gene nuclear encoded tRNA leucine 2 (anticodon CAG) Neighboring gene microRNA 383 Neighboring gene predicted gene, 40493 Neighboring gene tumor suppressor candidate 3 Neighboring gene MAD homolog 2 pseudogene

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Clone Names

    • MGC123465, MGC123466

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    cardiac muscle tissue development IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    heart contraction IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    membrane organization TAS
    Traceable Author Statement
    more info
    PubMed 
    muscle cell development IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    muscle organ development IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    sarcoglycan complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    sarcolemma IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Preferred Names
    zeta-sarcoglycan
    Names
    ZSG1
    zeta-SG

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145841.2NP_665840.2  zeta-sarcoglycan

      See identical proteins and their annotated locations for NP_665840.2

      Status: VALIDATED

      Source sequence(s)
      AK136779
      Consensus CDS
      CCDS22251.2
      UniProtKB/Swiss-Prot
      Q8BX51
      Related
      ENSMUSP00000113912.1, OTTMUSP00000041695, ENSMUST00000118896.1, OTTMUST00000078418
      Conserved Domains (1) summary
      pfam04790
      Location:43296
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000074.6 Reference GRCm38.p4 C57BL/6J

      Range
      37517840..38662638 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006509120.3XP_006509183.1  zeta-sarcoglycan isoform X1

      See identical proteins and their annotated locations for XP_006509183.1

      UniProtKB/Swiss-Prot
      Q8BX51
      Conserved Domains (1) summary
      pfam04790
      Location:43296
      Sarcoglycan_1; Sarcoglycan complex subunit protein
    2. XM_011242138.1XP_011240440.1  zeta-sarcoglycan isoform X2

      See identical proteins and their annotated locations for XP_011240440.1

      UniProtKB/Swiss-Prot
      Q8BX51
      Conserved Domains (1) summary
      pfam04790
      Location:30283
      Sarcoglycan_1; Sarcoglycan complex subunit protein
    3. XM_006509122.1XP_006509185.1  zeta-sarcoglycan isoform X3

      Conserved Domains (1) summary
      pfam04790
      Location:5222
      Sarcoglycan_1; Sarcoglycan complex subunit protein
    4. XM_011242139.2XP_011240441.1  zeta-sarcoglycan isoform X4

      Conserved Domains (1) summary
      pfam04790
      Location:43143
      Sarcoglycan_1; Sarcoglycan complex subunit protein
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