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    Gjd2 gap junction protein, delta 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 50564, updated on 26-Sep-2017
    Official Symbol
    Gjd2provided by RGD
    Official Full Name
    gap junction protein, delta 2provided by RGD
    Primary source
    RGD:2694
    See related
    Ensembl:ENSRNOG00000008337
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Cx36; Gja9
    Summary
    component of gap junctions that may mediate cell-cell signaling that contributes to insulin cell function [RGD, Feb 2006]
    Orthologs
    Location:
    3q35
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (105467480..105470475, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 3 NC_005102.3 (112039996..112045600, complement)

    Chromosome 3 - NC_005102.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108350437 Neighboring gene 60S ribosomal protein L17 pseudogene Neighboring gene uncharacterized LOC103691860 Neighboring gene uncharacterized LOC100910676 Neighboring gene 60S ribosomal protein L13-like Neighboring gene actin, alpha, cardiac muscle 1

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    action potential IEA
    Inferred from Electronic Annotation
    more info
     
    action potential ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    cell-cell signaling IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    cell-cell signaling ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
     
    chemical synaptic transmission ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    visual perception IEA
    Inferred from Electronic Annotation
    more info
     
    visual perception ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    connexin complex IEA
    Inferred from Electronic Annotation
    more info
     
    gap junction IDA
    Inferred from Direct Assay
    more info
    PubMed 
    gap junction TAS
    Traceable Author Statement
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    gap junction delta-2 protein
    Names
    connexin-36
    gap junction alpha-9 protein
    gap junction membrane channel protein alpha 9

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019281.2NP_062154.1  gap junction delta-2 protein

      See identical proteins and their annotated locations for NP_062154.1

      Status: PROVISIONAL

      Source sequence(s)
      Y16898
      UniProtKB/Swiss-Prot
      O70610
      Related
      ENSRNOP00000011078.1, ENSRNOT00000011078.3
      Conserved Domains (3) summary
      smart00037
      Location:4577
      CNX; Connexin homologues
      smart01089
      Location:209275
      Connexin_CCC; Gap junction channel protein cysteine-rich domain
      pfam00029
      Location:3277
      Connexin; Connexin

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005102.4 Reference Rnor_6.0 Primary Assembly

      Range
      105467480..105470475 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000071.1 Alternate Rn_Celera

      Range
      99741517..99744512 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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