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    Dlx3 distal-less homeobox 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 287638, updated on 3-Apr-2018
    Official Symbol
    Dlx3provided by RGD
    Official Full Name
    distal-less homeobox 3provided by RGD
    Primary source
    RGD:1304875
    See related
    Ensembl:ENSRNOG00000004278
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Muscle (RPKM 1.9), Lung (RPKM 1.3) and 2 other tissues See more
    Orthologs
    See Dlx3 in Genome Data Viewer
    Location:
    10q26
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (82937971..82943367)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 10 NC_005109.3 (82748717..82754113)

    Chromosome 10 - NC_005109.4Genomic Context describing neighboring genes Neighboring gene integrin subunit alpha 3 Neighboring gene uncharacterized LOC102546327 Neighboring gene distal-less homeobox 4 Neighboring gene uncharacterized LOC103693422 Neighboring gene tachykinin 4

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    chromatin binding IEA
    Inferred from Electronic Annotation
    more info
     
    chromatin binding ISO
    Inferred from Sequence Orthology
    more info
     
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    blood vessel development IEA
    Inferred from Electronic Annotation
    more info
     
    blood vessel development ISO
    Inferred from Sequence Orthology
    more info
     
    odontoblast differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    odontoblast differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    odontogenesis of dentin-containing tooth IEA
    Inferred from Electronic Annotation
    more info
     
    odontogenesis of dentin-containing tooth ISO
    Inferred from Sequence Orthology
    more info
     
    placenta development IEA
    Inferred from Electronic Annotation
    more info
     
    placenta development ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
     
    transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105832.1NP_001099302.1  homeobox protein DLX-3

      See identical proteins and their annotated locations for NP_001099302.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473948
      UniProtKB/TrEMBL
      D4ADD0
      Related
      ENSRNOP00000005797.3, ENSRNOT00000005797.4
      Conserved Domains (3) summary
      COG5576
      Location:109230
      COG5576; Homeodomain-containing transcription factor [Transcription]
      pfam00046
      Location:132185
      Homeobox; Homeobox domain
      pfam12413
      Location:27107
      DLL_N; Homeobox protein distal-less-like N terminal

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005109.4 Reference Rnor_6.0 Primary Assembly

      Range
      82937971..82943367
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000078.1 Alternate Rn_Celera

      Range
      78837978..78843374
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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