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    Vti1a vesicle transport through interaction with t-SNAREs 1A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 65277, updated on 25-May-2017
    Official Symbol
    Vti1aprovided by RGD
    Official Full Name
    vesicle transport through interaction with t-SNAREs 1Aprovided by RGD
    Primary source
    RGD:621490
    See related
    Ensembl:ENSRNOG00000042786
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Vti1
    Summary
    a SNARE protein; involved in membrane fusion during recycling or biogenesis of synaptic vesicles [RGD, Feb 2006]
    Annotation information
    Annotation category: suggests misassembly
    Annotation category: partial on reference assembly
    Orthologs
    Location:
    1q55
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (276310072..276508635)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (283705427..283902980)

    Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene acyl-CoA synthetase long-chain family member 5 Neighboring gene zinc finger, DHHC-type containing 6 Neighboring gene uncharacterized LOC103695066 Neighboring gene uncharacterized LOC103691376 Neighboring gene uncharacterized LOC102554304 Neighboring gene transcription factor 7 like 2

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    SNAP receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    SNAP receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    SNARE binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    ER to Golgi vesicle-mediated transport IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Golgi ribbon formation IEA
    Inferred from Electronic Annotation
    more info
     
    Golgi ribbon formation ISO
    Inferred from Sequence Orthology
    more info
     
    Golgi to vacuole transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    autophagy IEA
    Inferred from Electronic Annotation
    more info
     
    autophagy ISO
    Inferred from Sequence Orthology
    more info
     
    intra-Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    membrane fusion IEA
    Inferred from Electronic Annotation
    more info
     
    protein targeting to vacuole IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    retrograde transport, endosome to Golgi IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
     
    retrograde transport, endosome to Golgi ISO
    Inferred from Sequence Orthology
    more info
     
    retrograde transport, endosome to Golgi ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    vesicle fusion with Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    voluntary musculoskeletal movement IEA
    Inferred from Electronic Annotation
    more info
     
    voluntary musculoskeletal movement ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    ER to Golgi transport vesicle membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
     
    SNARE complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    autophagosome IEA
    Inferred from Electronic Annotation
    more info
     
    autophagosome ISO
    Inferred from Sequence Orthology
    more info
     
    cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    clathrin-coated vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    clathrin-coated vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    intracellular IEA
    Inferred from Electronic Annotation
    more info
     
    intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    late endosome membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    neuron projection terminus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    neuronal cell body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    perinuclear region of cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    synaptic vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
     
    terminal bouton IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    vesicle transport through interaction with t-SNAREs homolog 1A
    Names
    SNARE Vti1a-beta protein
    vesicle transport v-SNARE protein Vti1-like 2
    vti1-rp2

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_023101.1NP_075589.1  vesicle transport through interaction with t-SNAREs homolog 1A

      See identical proteins and their annotated locations for NP_075589.1

      Status: PROVISIONAL

      Source sequence(s)
      AF262221
      UniProtKB/Swiss-Prot
      Q9JI51
      Related
      ENSRNOP00000061050.2, ENSRNOT00000066236.3
      Conserved Domains (2) summary
      cd15891
      Location:122183
      SNARE_Vti1a; SNARE motif of Vti1b-like
      pfam05008
      Location:1290
      V-SNARE; Vesicle transport v-SNARE protein N-terminus

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

      Range
      276310072..276508635
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000069.1 Alternate Rn_Celera

      Range
      250063252..250364895
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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