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    RACK1B_AT receptor for activated C kinase 1B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841284, updated on 9-Jul-2017
    Gene symbol
    RACK1B_AT
    Gene description
    receptor for activated C kinase 1B
    Primary source
    Araport:AT1G48630
    Locus tag
    AT1G48630
    Gene type
    protein coding
    RNA name
    receptor for activated C kinase 1B
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11I4.18; F11I4_18; RACK1B; receptor for activated C kinase 1B
    Summary
    Encodes a protein with similarity to mammalian RACKs. RACKs function to shuttle activated protein kinase C to different subcellular sites and may also function as a scaffold through physical interactions with other proteins. RACK1B has no phenotype on its own and probably acts redundantly with RACK1A and RACK1C.
    See RACK1B_AT in Map Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (17981636..17983377, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene high mobility group A5 Neighboring gene miscRNA Neighboring gene peroxin 3 Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene DEA(D/H)-box RNA helicase family protein

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    • Seed Development, organism-specific biosystem (from WikiPathways)
      Seed Development, organism-specific biosystemThis Arabidopsis seed development pathway network in GPML format was projected using the reference rice seed development network [[Pathway:WP2199]] and the Arabidopsis to rice gene homology data sets...
    Products Interactant Other Gene Complex Source Pubs Description

    Homology

    NM_103759.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    MAP-kinase scaffold activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    nucleotide binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    signal transducer activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cellular response to abscisic acid stimulus IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    positive regulation of signal transduction IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of translation IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    ribosome biogenesis IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    root development IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    seed germination IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    shoot system development IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISM
    Inferred from Sequence Model
    more info
     
    cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytosolic ribosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Names
    receptor for activated C kinase 1B
    NP_175296.1
    • receptor for activated C kinase 1B (RACK1B_AT); FUNCTIONS IN: nucleotide binding; INVOLVED IN: shoot development, root development; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: receptor for activated C kinase 1C (TAIR:AT3G18130.1); Has 89864 Blast hits to 37441 proteins in 950 species: Archae - 80; Bacteria - 10219; Metazoa - 35696; Fungi - 20361; Plants - 11462; Viruses - 9; Other Eukaryotes - 12037 (source: NCBI BLink).

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17981636..17983377 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103759.5NP_175296.1  receptor for activated C kinase 1B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175296.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C4Z6
      UniProtKB/TrEMBL
      A0A178W908
      Conserved Domains (3) summary
      COG2319
      Location:20323
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:6321
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:1861
      7WD40; WD40 repeat [structural motif]
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