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    Atp5b ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide [ Rattus norvegicus (Norway rat) ]

    Gene ID: 171374, updated on 7-May-2017
    Official Symbol
    Atp5bprovided by RGD
    Official Full Name
    ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptideprovided by RGD
    Primary source
    RGD:621368
    See related
    Ensembl:ENSRNOG00000002840
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    beta subunit of rat liver ATP synthase [RGD, Feb 2006]
    Orthologs
    Location:
    7q11
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (2504708..2511748)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 7 NC_005106.3 (2484095..2490338)

    Chromosome 7 - NC_005106.4Genomic Context describing neighboring genes Neighboring gene nascent polypeptide-associated complex alpha subunit Neighboring gene prostaglandin E synthase 3 Neighboring gene basic salivary proline-rich protein 2-like Neighboring gene bromodomain adjacent to zinc finger domain, 2A Neighboring gene RNA binding motif, single stranded interacting protein 2

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    ATP binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    ATP binding IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    ATPase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    ATPase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    contributes_to ATPase activity ISO
    Inferred from Sequence Orthology
    more info
     
    MHC class I protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    MHC class I protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    angiostatin binding IEA
    Inferred from Electronic Annotation
    more info
     
    angiostatin binding ISO
    Inferred from Sequence Orthology
    more info
     
    calcium ion binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    lipoprotein particle receptor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    proton-transporting ATP synthase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
     
    proton-transporting ATP synthase activity, rotational mechanism ISO
    Inferred from Sequence Orthology
    more info
     
    proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
     
    proton-transporting ATPase activity, rotational mechanism ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    ATP biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    ATP hydrolysis coupled cation transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    ATP metabolic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    ATP synthesis coupled proton transport IEA
    Inferred from Electronic Annotation
    more info
     
    angiogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    angiogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    lipid metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    negative regulation of cell adhesion involved in substrate-bound cell migration IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of cell adhesion involved in substrate-bound cell migration ISO
    Inferred from Sequence Orthology
    more info
     
    osteoblast differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    osteoblast differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of blood vessel endothelial cell migration IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of blood vessel endothelial cell migration ISO
    Inferred from Sequence Orthology
    more info
     
    proton transport ISO
    Inferred from Sequence Orthology
    more info
     
    receptor-mediated endocytosis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    regulation of intracellular pH IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of intracellular pH ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cell surface IEA
    Inferred from Electronic Annotation
    more info
     
    cell surface ISO
    Inferred from Sequence Orthology
    more info
     
    extracellular exosome IEA
    Inferred from Electronic Annotation
    more info
     
    extracellular exosome ISO
    Inferred from Sequence Orthology
    more info
     
    extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
     
    extracellular matrix ISO
    Inferred from Sequence Orthology
    more info
     
    membrane ISO
    Inferred from Sequence Orthology
    more info
     
    membrane raft IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mitochondrial inner membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mitochondrial inner membrane ISO
    Inferred from Sequence Orthology
    more info
     
    mitochondrial membrane ISO
    Inferred from Sequence Orthology
    more info
     
    mitochondrial nucleoid IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrial nucleoid ISO
    Inferred from Sequence Orthology
    more info
     
    mitochondrial proton-transporting ATP synthase complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mitochondrial proton-transporting ATP synthase complex IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrial proton-transporting ATP synthase complex ISO
    Inferred from Sequence Orthology
    more info
     
    mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mitochondrion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    myelin sheath IEA
    Inferred from Electronic Annotation
    more info
     
    myelin sheath ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    proton-transporting ATP synthase complex ISO
    Inferred from Sequence Orthology
    more info
     
    proton-transporting ATP synthase complex, catalytic core F(1) IDA
    Inferred from Direct Assay
    more info
    PubMed 
    proton-transporting ATP synthase complex, catalytic core F(1) IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    ATP synthase subunit beta, mitochondrial
    Names
    ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
    mitochondrial ATP synthase beta subunit
    NP_599191.1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_134364.1NP_599191.1  ATP synthase subunit beta, mitochondrial precursor

      See identical proteins and their annotated locations for NP_599191.1

      Status: VALIDATED

      Source sequence(s)
      M19044, M25301, M57634
      UniProtKB/Swiss-Prot
      P10719
      Related
      ENSRNOP00000003965.3, ENSRNOT00000003965.4
      Conserved Domains (4) summary
      PRK09280
      Location:58524
      PRK09280; F0F1 ATP synthase subunit beta; Validated
      cd01133
      Location:131410
      F1-ATPase_beta; F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a ...
      pfam00306
      Location:418525
      ATP-synt_ab_C; ATP synthase alpha/beta chain, C terminal domain
      pfam02874
      Location:63129
      ATP-synt_ab_N; ATP synthase alpha/beta family, beta-barrel domain

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005106.4 Reference Rnor_6.0 Primary Assembly

      Range
      2504708..2511748
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000075.1 Alternate Rn_Celera

      Range
      394648..401125
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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