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    Calcoco2 calcium binding and coiled-coil domain 2 [ Mus musculus (house mouse) ]

    Gene ID: 76815, updated on 25-Sep-2017
    Official Symbol
    Calcoco2provided by MGI
    Official Full Name
    calcium binding and coiled-coil domain 2provided by MGI
    Primary source
    MGI:MGI:1343177
    See related
    Ensembl:ENSMUSG00000006056 Vega:OTTMUSG00000001956
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ndp52; C77254; Ndp52l1; 2410154J16Rik
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    Location:
    11 D; 11 59.4 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (96098916..96124624, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (95960640..95973276, complement)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2Z Neighboring gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9) Neighboring gene predicted gene, 30084 Neighboring gene tubulin tyrosine ligase-like family, member 6 Neighboring gene homeobox B13

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 
    • Mitophagy - animal, organism-specific biosystem (from KEGG)
      Mitophagy - animal, organism-specific biosystemMitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process calle...
    • Mitophagy - animal, conserved biosystem (from KEGG)
      Mitophagy - animal, conserved biosystemMitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process calle...

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    autophagy IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    PML body ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    calcium-binding and coiled-coil domain-containing protein 2
    Names
    nuclear domain 10 protein 52 like 1
    nuclear domain 10 protein NDP52

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001271018.1NP_001257947.1  calcium-binding and coiled-coil domain-containing protein 2

      See identical proteins and their annotated locations for NP_001257947.1

      Status: VALIDATED

      Source sequence(s)
      AK145542, AK167172, AL603682, BB730060
      Consensus CDS
      CCDS59567.1
      UniProtKB/Swiss-Prot
      A2A6M5
      Related
      ENSMUSP00000087407.4, OTTMUSP00000001897, ENSMUST00000068686.12, OTTMUST00000003920
      Conserved Domains (1) summary
      pfam07888
      Location:17188
      CALCOCO1; Calcium binding and coiled-coil domain (CALCOCO1) like

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      96098916..96124624 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006534460.3XP_006534523.1  calcium-binding and coiled-coil domain-containing protein 2 isoform X1

      Conserved Domains (1) summary
      pfam07888
      Location:30201
      CALCOCO1; Calcium binding and coiled-coil domain (CALCOCO1) like

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001100177.1: Suppressed sequence

      Description
      NM_001100177.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    2. NM_029755.3: Suppressed sequence

      Description
      NM_029755.3: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
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