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    Rcn3 reticulocalbin 3, EF-hand calcium binding domain [ Mus musculus (house mouse) ]

    Gene ID: 52377, updated on 5-Nov-2017
    Official Symbol
    Rcn3provided by MGI
    Official Full Name
    reticulocalbin 3, EF-hand calcium binding domainprovided by MGI
    Primary source
    MGI:MGI:1277122
    See related
    Ensembl:ENSMUSG00000019539 Vega:OTTMUSG00000031713
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    RLP49; D7Ertd671e; 6030455P07Rik; D530026G20Rik
    Orthologs
    Location:
    7 B3; 7 29.11 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (45082914..45092257, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (52338284..52347583, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene proline rich 12 Neighboring gene proline-rich Gla (G-carboxyglutamic acid) polypeptide 2 Neighboring gene nitric oxide synthase interacting protein Neighboring gene Fc receptor, IgG, alpha chain transporter Neighboring gene microRNA 150

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Clone Names

    • MGC102610

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001355045.1NP_001341974.1  reticulocalbin-3 precursor

      Status: VALIDATED

      Source sequence(s)
      AC126256
      Conserved Domains (1) summary
      cd16230
      Location:44311
      EFh_CREC_RCN3; EF-hand, calcium binding motif, found in reticulocalbin-3 (RCN-3)
    2. NM_026555.2NP_080831.2  reticulocalbin-3 precursor

      See identical proteins and their annotated locations for NP_080831.2

      Status: VALIDATED

      Source sequence(s)
      AK077943, AV129283, BY248337
      Consensus CDS
      CCDS21229.1
      UniProtKB/Swiss-Prot
      Q8BH97
      Related
      ENSMUSP00000019683.3, OTTMUSP00000041776, ENSMUST00000019683.10, OTTMUST00000078552
      Conserved Domains (1) summary
      cd16230
      Location:44311
      EFh_CREC_RCN3; EF-hand, calcium binding motif, found in reticulocalbin-3 (RCN-3)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      45082914..45092257 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006540987.2XP_006541050.1  reticulocalbin-3 isoform X1

      See identical proteins and their annotated locations for XP_006541050.1

      UniProtKB/Swiss-Prot
      Q8BH97
      Related
      ENSMUSP00000147341.1, OTTMUSP00000041778, ENSMUST00000210469.1, OTTMUST00000078554
      Conserved Domains (1) summary
      cd16230
      Location:44311
      EFh_CREC_RCN3; EF-hand, calcium binding motif, found in reticulocalbin-3 (RCN-3)
    2. XM_006540986.2XP_006541049.1  reticulocalbin-3 isoform X1

      UniProtKB/Swiss-Prot
      Q8BH97
      Related
      ENSMUSP00000148227.1, OTTMUSP00000041775, ENSMUST00000211352.1, OTTMUST00000078551
      Conserved Domains (1) summary
      cd16230
      Location:44311
      EFh_CREC_RCN3; EF-hand, calcium binding motif, found in reticulocalbin-3 (RCN-3)
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