Format

Send to:

Choose Destination

Links from PubMed

    • Showing Current items.

    rxraa retinoid X receptor, alpha a [ Danio rerio (zebrafish) ]

    Gene ID: 555578, updated on 3-Jul-2017
    Official Symbol
    rxraaprovided by ZNC
    Official Full Name
    retinoid X receptor, alpha aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070314-2
    See related
    Ensembl:ENSDARG00000057737 Vega:OTTDARG00000031493
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    RXRalpha-B
    Location:
    chromosome: 21
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (17767991..17947564)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (17731459..17910928)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene BarH-like homeobox 1b Neighboring gene stomatin Neighboring gene gelsolin a Neighboring gene uncharacterized LOC110438227 Neighboring gene dynein, axonemal, intermediate chain 1, paralog 2 Neighboring gene syntaxin 2a

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    steroid hormone receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    transcription factor activity, sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    steroid hormone mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    retinoic acid receptor RXR-alpha-A
    Names
    NR2B1-B
    nuclear receptor subfamily 2 group B member 1-A
    retinoid X receptor alpha-A

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001161551.1NP_001155023.1  retinoic acid receptor RXR-alpha-A

      Status: PROVISIONAL

      Source sequence(s)
      CU062650
      UniProtKB/TrEMBL
      F1Q4V9
      Related
      ENSDARP00000074930.5, OTTDARP00000034745, ENSDART00000080481.5, OTTDART00000043834
      Conserved Domains (3) summary
      cd06943
      Location:225436
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:129205
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:26122
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      17767991..17947564
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005161183.4XP_005161240.1  retinoic acid receptor RXR-alpha-A isoform X1

      Conserved Domains (3) summary
      cd06943
      Location:267478
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:166247
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:63159
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1
    2. XM_005161184.4XP_005161241.1  retinoic acid receptor RXR-alpha-A isoform X2

      UniProtKB/TrEMBL
      F1R1Y8
      Related
      ENSDARP00000104454.1
      Conserved Domains (3) summary
      cd06943
      Location:262473
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:166242
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:63159
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1
    Support Center