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    NBAT1 neuroblastoma associated transcript 1 [ Homo sapiens (human) ]

    Gene ID: 729177, updated on 20-May-2018
    Official Symbol
    NBAT1provided by HGNC
    Official Full Name
    neuroblastoma associated transcript 1provided by HGNC
    Primary source
    HGNC:HGNC:49075
    See related
    Ensembl:ENSG00000260455 MIM:616206
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CASC14; NBAT-1
    Expression
    Low expression observed in reference dataset See more
    See NBAT1 in Genome Data Viewer
    Location:
    6p22.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCh38.p12 (GCF_000001405.38) 6 NC_000006.12 (22134602..22147193, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (22134831..22147422, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene cancer susceptibility 15 Neighboring gene uncharacterized LOC105374970 Neighboring gene RNA, 7SK small nuclear pseudogene 240 Neighboring gene VISTA enhancer hs1335 Neighboring gene prolactin

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Jun 15 11:32:44 2016

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    NHGRI GWAS Catalog

    Description
    Chromosome 6p22 locus associated with clinically aggressive neuroblastoma.
    NHGRI GWA Catalog
    Common variation at 6q16 within HACE1 and LIN28B influences susceptibility to neuroblastoma.
    NHGRI GWA Catalog
    Integrative genomics identifies LMO1 as a neuroblastoma oncogene.
    NHGRI GWA Catalog

    Markers

    Other Names

    • cancer susceptibility candidate 14 (non-protein coding)

    Clone Names

    • FLJ44180

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_034143.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK126168, AL008732, H15083
      Related
      ENST00000566912.1

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p12 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p12 Primary Assembly

      Range
      22134602..22147193 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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